PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.7NG078800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB | ||||||||
Protein Properties | Length: 985aa MW: 110691 Da PI: 4.8865 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.1 | 9.9e-14 | 8 | 53 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l Pavir.7NG078800.1.p 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53 78*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 32.8 | 1.6e-10 | 60 | 103 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l Pavir.7NG078800.1.p 60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103 68*****************99.********8..**********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.008 | 2 | 57 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.7E-18 | 5 | 56 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.0E-15 | 6 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.99E-12 | 10 | 53 | No hit | No description |
Pfam | PF13921 | 4.6E-13 | 10 | 70 | No hit | No description |
SuperFamily | SSF46689 | 6.47E-21 | 33 | 108 | IPR009057 | Homeodomain-like |
CDD | cd11659 | 1.07E-30 | 55 | 106 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.4E-14 | 57 | 104 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.443 | 58 | 107 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-12 | 58 | 105 | IPR001005 | SANT/Myb domain |
Pfam | PF11831 | 5.6E-60 | 406 | 658 | IPR021786 | Pre-mRNA splicing factor component Cdc5p/Cef1 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 985 aa Download sequence Send to blast |
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT 60 EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACAKD ENYEPNDDPR 120 KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR 180 LASLQKRREL KAAGIDTRKR KRKRKGIDYN AEIPFEKRPP PGFYDTVGED KPPEHVQFPT 240 TIEDLEGKRR VDIEAQLRKQ DIARNKILQR QDAPAAIMQA NKLNDPEAVT RRSKLMLPPP 300 QISDHELEEI AKMGSAGDPA LAEELGEGST ATRALLSSYS QTPRLGMTPL RTPQRTPAGK 360 GDAIMMEAEN LARLRESQTP LLGGDNPDLH PSDFSGVTPR KKEIQTPNPM ATPLALASPG 420 PGVTPRVGMT PSRDGSSFGI TPKATPFRDE LRINEEVELQ DSAKLELRRQ AELRKSLRSG 480 FASIPQPKNE YQIVMPPITE DEKEEAEERI EEDMSDRLAR ERAEEQARQE ALLRKRSKVL 540 QRSLPRPPAA SVEVLRQSLI KGGESRSRST FVPPTSLEQA DDLINEELLR LLEHDNAKYP 600 LDEKTQKEKK KGNKRQSNAA AVPEIEDFDE DELKEASSLV QEEIQYLRVA MGHENESFED 660 FVKAHDACQE DLMYFPTNNS YGLASVTGNA DKISALQNDF EIVKKRMDEE AKKASRLEQK 720 IKLLTQGYQV RGGKLWSQVQ DTFKQMDTAA TELECFQELQ KQEQLAASYR VRNLTEEVDK 780 QKALERTLQS RYGDLMSVYH RIQEQLEEHK IQLRKQEAIE AENCAREEAA AQNRAAEEEN 840 ERRRNVEVGK EHMNSITDEE PAPAGSMQIN EDQMDVDNTN VDGEFVGPIP PAPDTQGDVI 900 EASAQENSSN APSSDGVTTN GEACDMVDAS NVESQDNASG SLLMDAGNQE DGKNSIPLVG 960 ANEGNTALSS DDAVTNEQND MVAE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5mqf_L | 0.0 | 2 | 796 | 3 | 792 | Cell division cycle 5-like protein |
5xjc_L | 0.0 | 2 | 796 | 3 | 792 | Cell division cycle 5-like protein |
5yzg_L | 0.0 | 2 | 796 | 3 | 792 | Cell division cycle 5-like protein |
5z56_L | 0.0 | 2 | 796 | 3 | 792 | Cell division cycle 5-like protein |
5z57_L | 0.0 | 2 | 796 | 3 | 792 | Cell division cycle 5-like protein |
5z58_L | 0.0 | 2 | 796 | 3 | 792 | Cell division cycle 5-like protein |
6ff4_L | 0.0 | 2 | 796 | 3 | 792 | Cell division cycle 5-like protein |
6ff7_L | 0.0 | 2 | 796 | 3 | 792 | Cell division cycle 5-like protein |
6icz_L | 0.0 | 2 | 796 | 3 | 792 | Cell division cycle 5-like protein |
6id0_L | 0.0 | 2 | 796 | 3 | 792 | Cell division cycle 5-like protein |
6id1_L | 0.0 | 2 | 796 | 3 | 792 | Cell division cycle 5-like protein |
6qdv_O | 0.0 | 2 | 796 | 3 | 792 | Cell division cycle 5-like protein |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 185 | 204 | KRRELKAAGIDTRKRKRKRK |
2 | 198 | 204 | KRKRKRK |
3 | 199 | 204 | RKRKRK |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed extensively in shoot and root meristems. {ECO:0000269|PubMed:8917598}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.7NG078800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025823518.1 | 0.0 | cell division cycle 5-like protein | ||||
Swissprot | P92948 | 0.0 | CDC5L_ARATH; Cell division cycle 5-like protein | ||||
TrEMBL | A0A3L6QAN4 | 0.0 | A0A3L6QAN4_PANMI; Cell division cycle 5-like protein | ||||
STRING | Pavir.Ga02351.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4416 | 35 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09770.1 | 0.0 | cell division cycle 5 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.7NG078800.1.p |
Publications ? help Back to Top | |||
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