PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG076100.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 701aa    MW: 79223.9 Da    PI: 10.3761
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG076100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.49.5e-17300384187
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                          ++k+++++++lk+  l l+  f+ ++g+++++++tl+   +s +sW+v      k+g+y l++GW +F+k+n Lk gD+++F ++++
  Pavir.7NG076100.2.p 300 WIKKEINANSLKRE-LALSAAFCGAIGLPEHCTITLKTSMSSTESWQVLA-LPSKKGSYQLRNGWMRFCKENSLKIGDICTFNVIET 384
                          789999******98.**************99988888888999*****99.4666677*************************8765 PP
2B357.72.1e-18453537186
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                          ++k+ +++++l++  l l  +f++++g+ + + +tl+ +  s  sW+v+ i  k+ ++y+l kGW++F+++n Lk gD+++F +++
  Pavir.7NG076100.2.p 453 WIKKVINAHTLEKY-LALATSFCDAIGLRESCMITLKTTMDSTISWQVRGISIKNCRSYLLIKGWRRFCQENSLKKGDICTFNVIE 537
                          68999999999997.**************99988888888899***************************************9765 PP
3B348.31.8e-15608689286
                          EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                          +k++++  + k+ rl+lp  f++++g+ +++++tl+   +s  sW+ ++   ++s+++v  +G ++F+++ng+k+gD+++Fk ++
  Pavir.7NG076100.2.p 608 IKKEINMWAIKN-RLYLPPVFCKAIGIREPCKITLKTSMSSTTSWQARVVPYNRSSHHV--SGLQRFCRDNGIKVGDVCTFKIVD 689
                          677777777776.6**************99998888888999*******6666666655..8********************654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508637.4587100IPR003340B3 DNA binding domain
SMARTSM010190.8412100IPR003340B3 DNA binding domain
SuperFamilySSF1019365.1E-818102IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.2E-718102IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.572130225IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.8E-11132226IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0024133225IPR003340B3 DNA binding domain
SuperFamilySSF1019365.3E-12133225IPR015300DNA-binding pseudobarrel domain
CDDcd100177.82E-6133222No hitNo description
SuperFamilySSF1019364.51E-16296394IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-16297393IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.3E-4301397IPR003340B3 DNA binding domain
PfamPF023627.7E-13301384IPR003340B3 DNA binding domain
CDDcd100173.10E-9306379No hitNo description
PROSITE profilePS5086310.856331395IPR003340B3 DNA binding domain
SuperFamilySSF1019366.08E-18448549IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.1E-19449547IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.364452549IPR003340B3 DNA binding domain
CDDcd100171.05E-10454533No hitNo description
SMARTSM010199.6E-7454549IPR003340B3 DNA binding domain
PfamPF023622.4E-14454538IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-15604697IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0021608700IPR003340B3 DNA binding domain
CDDcd100173.50E-10617686No hitNo description
Gene3DG3DSA:2.40.330.102.3E-14617697IPR015300DNA-binding pseudobarrel domain
PfamPF023625.8E-13617697IPR003340B3 DNA binding domain
PROSITE profilePS508639.093619700IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 701 aa     Download sequence    Send to blast
MPPSAAAARH PRVLLPFTSD TLRIPDELAA EVGSDEALVV GPTGGKAKPW RVEVGWDGDG  60
AFLGRGWPGF AAACGVAPRW LLVLRHRGHG VLSVKGFDAD SCLLREHGAR PPPPSAAVEA  120
TTGSQDTARK LQFLRVLPKD FREKMLIPAK IVQYIPKEHL DYRKAIVSGP LGKVSPIELE  180
MNQSGVFFRG GWSQFLVLHG ITEDNSLLLR YEGNMMFTVK VFEADGHQRE SKHKDIGTQQ  240
VSTLPDIRER QEESSVSIQK RCNSNWLNNG GQKMQKGPIT RLKKAPLWRK SVFKIGPPSW  300
IKKEINANSL KRELALSAAF CGAIGLPEHC TITLKTSMSS TESWQVLALP SKKGSYQLRN  360
GWMRFCKENS LKIGDICTFN VIETTMWHVV VTRCKEKMNQ LCYEYPSISS RMHMSKSKWP  420
RSRRNKRSNG SRSFLNKTAF HRKSFYEIGP PSWIKKVINA HTLEKYLALA TSFCDAIGLR  480
ESCMITLKTT MDSTISWQVR GISIKNCRSY LLIKGWRRFC QENSLKKGDI CTFNVIETTV  540
WHVIITRYKE KIDQPCYEKP SASSMKRKRE DDRSISEEQK RPKGSMTSWC KASSKTGCIF  600
EIGPPAWIKK EINMWAIKNR LYLPPVFCKA IGIREPCKIT LKTSMSSTTS WQARVVPYNR  660
SSHHVSGLQR FCRDNGIKVG DVCTFKIVDT TLWHVIIEPR *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.289721e-84callus| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG076100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825039.10.0putative B3 domain-containing protein Os04g0347400 isoform X1
TrEMBLA0A3L6PW370.0A0A3L6PW37_PANMI; Uncharacterized protein
STRINGPavir.J14658.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.17e-13B3 family protein