PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.7NG075900.3.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Protein Properties

Length: 275aa MW: 31375.1 Da PI: 10.0766

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.7NG075900.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	33.5	7.7e-11	9	53	41	86
TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 41 esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 s +sW+v +k ++y+l++GW F+k+n+L egD+ +F ++ Pavir.7NG075900.3.p 9 ISTESWQVCGL-PRKNKSYMLKQGWTTFCKENNLMEGDIGTFNIIE 53 56799999984.455568************************9765 PP
2	B3	48.3	1.8e-15	179	264	2	87
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS...-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esg...rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 +k+ ++ ++ +++ ++lp +f++ +g+ k++ +tl++ +s+ sW +l + + ++ ++++GW++F+ +n++++gD+++F+ +++ Pavir.7NG075900.3.p 179 IKKAMNDSTIERQ-FCLPLSFCNVNGLRKPCM--ITLKTsPSSastSSWLARL-HPYQNCSQLIGSGWNRFCYENKIRVGDVCTFEIIET 264 6777777777775.******9998885..666653444788****.444445579*********************8764 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	11.871	1	65	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	1.1E-10	9	63	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.55E-9	10	65	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	4.8E-8	10	61	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	1.2E-16	175	273	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	11.194	177	274	IPR003340	B3 DNA binding domain
CDD	cd10017	4.56E-9	179	273	No hit	No description
Gene3D	G3DSA:2.40.330.10	1.5E-16	181	272	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	1.5E-12	182	264	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MITLKTSMIS TESWQVCGLP RKNKSYMLKQ GWTTFCKENN LMEGDIGTFN IIETTLWHVI 60 ITRYKEEMIN QLFYESISAS NQKRKSENDK SSSEEKMRPK RSMASLNKAS LKTSALEMGP 120 PAWIKGINGS SIQNQIKWKS KSQRSGNKEQ MRQKIYKTSL NEESSKTKCA FGIGPPAWIK 180 KAMNDSTIER QFCLPLSFCN VNGLRKPCMI TLKTSPSSAS TSSWLARLHP YQNCSQLIGS 240 GWNRFCYENK IRVGDVCTFE IIETTQWDVS IERR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.7NG075900.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A3L6Q4J9	1e-165	A0A3L6Q4J9_PANMI; Uncharacterized protein
STRING	Pavir.J13361.1.p	0.0	(Panicum virgatum)

Link Out ? help Back to Top
Phytozome	Pavir.7NG075900.3.p