PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG075400.4.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 333aa    MW: 37350 Da    PI: 8.3365
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG075400.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.47.8e-11250330284
                          EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS..-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE CS
                   B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg..rsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkl 84 
                          +k+ + s  ++ + l l   f+++ g+++++  +++l+++      W+v+   r ++++ ++l +GW++F ++n Lkeg ++ +k+
  Pavir.7NG075400.4.p 250 IKKVIDSRIHEYN-LPLATAFCDAVGLQEPC--MIMLKTSMDslGCWQVRG--RPGKNSsFMLVQGWRRFYHENCLKEGNSFCIKY 330
                          6777777777776.9999**********888..5676665555699*****..6666666*********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.093145IPR003340B3 DNA binding domain
SuperFamilySSF1019363.53E-7347IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.0E-7447IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.3E-1365164IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.62866162IPR003340B3 DNA binding domain
SMARTSM010190.002768162IPR003340B3 DNA binding domain
SuperFamilySSF1019361.57E-1569164IPR015300DNA-binding pseudobarrel domain
CDDcd100171.93E-869159No hitNo description
SuperFamilySSF1019361.0E-10243329IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-10244330IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.361293332IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MDGDGAFLGS GWQEFADACG VGAGCFVVLR HRGGGVLTVK AFDSSCCLRE LGIRLGAMSS  60
TEASRRPQFI SLLPSDSMEK MIIPAKIVQN YMPREDWKNR TAVVFGPLGK ICEIDLRMDQ  120
SDMFFAGGWS QFLALHGITE ANCLLLRYDG NMTFTAKVFE PNGCQRESKY NNIGLQKIST  180
LQDKEKQQEV PCGEEQERLV RYQACIHTCQ RNNDWPCREG PKKPKAPMNS SNQAPLPKRS  240
LYEIGPPSWI KKVIDSRIHE YNLPLATAFC DAVGLQEPCM IMLKTSMDSL GCWQVRGRPG  300
KNSSFMLVQG WRRFYHENCL KEGNSFCIKY KA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG075400.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022683932.11e-107putative B3 domain-containing protein Os04g0347400 isoform X1
TrEMBLA0A0A9RFZ71e-123A0A0A9RFZ7_ARUDO; Uncharacterized protein
STRINGPavir.Gb02051.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.14e-08B3 family protein