PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.7NG075400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | B3 | ||||||||
Protein Properties | Length: 434aa MW: 48888.2 Da PI: 8.3518 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 40.3 | 5.7e-13 | 250 | 337 | 2 | 93 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS..-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg..rsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrs 88 +k+ + s ++ + l l f+++ g+++++ +++l+++ W+v+ r ++++ ++l +GW++F ++n Lkeg +++F +++++ Pavir.7NG075400.1.p 250 IKKVIDSRIHEYN-LPLATAFCDAVGLQEPC--MIMLKTSMDslGCWQVRG--RPGKNSsFMLVQGWRRFYHENCLKEGNMCTFNVVETT 334 6777777777776.9999**********888..5676665555699*****..6666666*************************76643 PP EE..E CS B3 89 efelv 93 + + Pavir.7NG075400.1.p 335 QW--H 337 33..3 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 9.093 | 1 | 45 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 5.1E-7 | 3 | 47 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 7.3E-7 | 4 | 47 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.4E-13 | 65 | 164 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 8.628 | 66 | 162 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0027 | 68 | 162 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.55E-15 | 69 | 164 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.99E-8 | 69 | 159 | No hit | No description |
SuperFamily | SSF101936 | 3.14E-15 | 243 | 343 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.4E-15 | 244 | 342 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.34 | 250 | 344 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.48E-6 | 250 | 328 | No hit | No description |
Pfam | PF02362 | 4.2E-9 | 261 | 336 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.052 | 293 | 344 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 434 aa Download sequence Send to blast |
MDGDGAFLGS GWQEFADACG VGAGCFVVLR HRGGGVLTVK AFDSSCCLRE LGIRLGAMSS 60 TEASRRPQFI SLLPSDSMEK MIIPAKIVQN YMPREDWKNR TAVVFGPLGK ICEIDLRMDQ 120 SDMFFAGGWS QFLALHGITE ANCLLLRYDG NMTFTAKVFE PNGCQRESKY NNIGLQKIST 180 LQDKEKQQEV PCGEEQERLV RYQACIHTCQ RNNDWPCREG PKKPKAPMNS SNQAPLPKRS 240 LYEIGPPSWI KKVIDSRIHE YNLPLATAFC DAVGLQEPCM IMLKTSMDSL GCWQVRGRPG 300 KNSSFMLVQG WRRFYHENCL KEGNMCTFNV VETTQWHVVI TRCKEKINQF NYQETPSASS 360 IKHKRDNNMS TSEEQKDPKS PMTSLNKASS SNRSIFEIGP PAWIRKEINI YTIQNVFVST 420 IIFLLICAKQ EVG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.7NG075400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025825039.1 | 1e-131 | putative B3 domain-containing protein Os04g0347400 isoform X1 | ||||
TrEMBL | A0A0A9S193 | 1e-154 | A0A0A9S193_ARUDO; Uncharacterized protein | ||||
STRING | Pavir.Gb02051.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP425 | 35 | 187 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 6e-08 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.7NG075400.1.p |