PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.7NG061900.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 524aa MW: 60772.9 Da PI: 9.2205

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.7NG061900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	21.7	6.5e-07	24	53	61	90
FAR1 61 gCkaklkvkkekdgkwevtkleleHnHela 90 gC+a+++ + +k+g+w v+k++leHnH la Pavir.7NG061900.1.p 24 GCDARVQFNISKEGVWTVQKVKLEHNHYLA 53 8**************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10551	5.4E-15	153	209	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.557	328	360	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.2E-4	335	362	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 524 aa Download sequence Send to blast
MYNTYARQVG FSVRKSRTKH CLDGCDARVQ FNISKEGVWT VQKVKLEHNH YLASPDKSHK 60 LRSQREVIEA NRKLIGQIRQ VGMKPGQVFD FIKEHYGGED KVSFSKMDCF NEIGRDPTFF 120 NAVQVDKEDG RIANFIWADG QSIMDYKCFG DALSFDTTFQ TNKFEMPFAL ILGTNHHKQT 180 IIFGCALLFN KTMESFVWLF ETFLTAICIY EDRSETYFIE KWDELLAKYN LENNSWMANL 240 YSLRAKWAAV YRDSFTADMN STQRSEGMNN VFKKRFRRKL GFSELLVECE KVAASLSYIP 300 NLPMLKTAAE SYTRRMYSEF EEEFRKQFTL SYRTITCSCR MFECIGLLCK HDLRVYNMNG 360 VYILSSQYIL PRWTKYAKSG FYIPKQGTDE VDLKTQAALV SRQATSLALK CSSSKELLDK 420 LQKAMHDLNF EADNYLSEMH EKSNESPTPN ECIREPLNGV ISFKIPKVLK GAKQTRFKNV 480 VEKNPENKKK KKGAQKKGND LPTNFCLCVK IHFKLLSYIF ECR*

Sequence ? help Back to Top

Protein Sequence Length: 524 aa Download sequence Send to blast

MYNTYARQVG FSVRKSRTKH CLDGCDARVQ FNISKEGVWT VQKVKLEHNH YLASPDKSHK  60
LRSQREVIEA NRKLIGQIRQ VGMKPGQVFD FIKEHYGGED KVSFSKMDCF NEIGRDPTFF  120
NAVQVDKEDG RIANFIWADG QSIMDYKCFG DALSFDTTFQ TNKFEMPFAL ILGTNHHKQT  180
IIFGCALLFN KTMESFVWLF ETFLTAICIY EDRSETYFIE KWDELLAKYN LENNSWMANL  240
YSLRAKWAAV YRDSFTADMN STQRSEGMNN VFKKRFRRKL GFSELLVECE KVAASLSYIP  300
NLPMLKTAAE SYTRRMYSEF EEEFRKQFTL SYRTITCSCR MFECIGLLCK HDLRVYNMNG  360
VYILSSQYIL PRWTKYAKSG FYIPKQGTDE VDLKTQAALV SRQATSLALK CSSSKELLDK  420
LQKAMHDLNF EADNYLSEMH EKSNESPTPN ECIREPLNGV ISFKIPKVLK GAKQTRFKNV  480
VEKNPENKKK KKGAQKKGND LPTNFCLCVK IHFKLLSYIF ECR*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	487	496	KKKKKGAQKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.7NG061900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002438310.2	0.0	protein FAR1-RELATED SEQUENCE 5 isoform X1
Refseq	XP_021305877.1	0.0	protein FAR1-RELATED SEQUENCE 5 isoform X1
Refseq	XP_021305880.1	0.0	protein FAR1-RELATED SEQUENCE 5 isoform X1
Refseq	XP_021305881.1	0.0	protein FAR1-RELATED SEQUENCE 5 isoform X2
TrEMBL	Q10HU3	0.0	Q10HU3_ORYSJ; Os03g0576100 protein
STRING	Sb06g016820.1	1e-155	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-60	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.7NG061900.1.p