PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.7NG057600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 253aa MW: 27124.3 Da PI: 4.5576 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 25.9 | 1.8e-08 | 148 | 187 | 6 | 50 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveY 50 Er+RR r+++++ eLr+l+P+ +K++Ka+i Av Y Pavir.7NG057600.1.p 148 IVSERKRRVRMKEKLYELRSLVPNI-----TKMDKASIIADAVVY 187 568*********************7.....6*********99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.22E-11 | 135 | 187 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.57E-11 | 139 | 187 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.5E-10 | 140 | 187 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.497 | 142 | 191 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.1E-6 | 148 | 197 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.1E-6 | 148 | 187 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MDMVEHQLLH FSPQEHFMTS PGFFAVDGGH PAHFQTGGFV VEPVGVAAGI EDGGWVEDLI 60 QLGDELFGGG DVIAVGTGDH KPWQFDDDNG GSPDDPPPSV SVDGDGSPPS VEQGAGDGVL 120 ASEPHRDRED GDDASPATRK RRDRSKTIVS ERKRRVRMKE KLYELRSLVP NITKMDKASI 180 IADAVVYSLA CFRVESSSLV RSGPDRLVST LTLKVSEQVG DATICEASVK LWVIAALLKE 240 GFRPEATVEI SS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 139 | 154 | KRRDRSKTIVSERKRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.7NG057600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ726972 | 7e-59 | KJ726972.1 Zea mays clone pUT3673 bHLH transcription factor (bHLH100) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025825747.1 | 4e-86 | transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR-like | ||||
TrEMBL | A0A3L6Q990 | 5e-89 | A0A3L6Q990_PANMI; Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR-like | ||||
STRING | Pavir.J29678.1.p | 1e-126 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5546 | 30 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28160.1 | 1e-21 | FER-like regulator of iron uptake |
Link Out ? help Back to Top | |
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Phytozome | Pavir.7NG057600.1.p |