PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.7NG055200.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB_related | ||||||||
Protein Properties | Length: 132aa MW: 14835.9 Da PI: 9.2128 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.5 | 1.2e-16 | 2 | 43 | 5 | 48 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +++E+ l++++++++G++ W++Iar+++ gRt++++k++w++++ Pavir.7NG055200.2.p 2 SPQEERLIIELHARWGKR-WSRIARRLP-GRTDNEIKNYWRTHM 43 89****************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.727 | 1 | 47 | IPR017930 | Myb domain |
CDD | cd00167 | 2.02E-12 | 1 | 43 | No hit | No description |
SMART | SM00717 | 2.0E-11 | 1 | 45 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 9.36E-13 | 2 | 48 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.0E-15 | 2 | 42 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-20 | 2 | 44 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 132 aa Download sequence Send to blast |
MSPQEERLII ELHARWGKRW SRIARRLPGR TDNEIKNYWR THMRKKAQER KMNMSPSSSS 60 SSLTYLSCLL DTAPIIGMGS GDNHNGSCVT STLESTQSVM DGYPMDQIWR EIEIPQAPAL 120 LGIAEGKDKT T* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.7NG055200.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU964979 | 1e-116 | EU964979.1 Zea mays clone 282909 MYB59 mRNA, complete cds. | |||
GenBank | KJ727898 | 1e-116 | KJ727898.1 Zea mays clone pUT5992 MYB transcription factor (MYB88) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001149882.1 | 6e-73 | MYB59 | ||||
Swissprot | Q53NK6 | 3e-63 | MYBA1_ORYSJ; Myb-related protein MYBAS1 | ||||
TrEMBL | A0A3L6EYF5 | 1e-71 | A0A3L6EYF5_MAIZE; Myb-related protein MYBAS1 | ||||
TrEMBL | B6TJ14 | 1e-71 | B6TJ14_MAIZE; MYB59 | ||||
TrEMBL | K3ZK15 | 2e-72 | K3ZK15_SETIT; Uncharacterized protein | ||||
TrEMBL | K7TQE6 | 1e-71 | K7TQE6_MAIZE; MYB transcription factor | ||||
TrEMBL | K7UNQ8 | 2e-72 | K7UNQ8_MAIZE; Putative MYB DNA-binding domain superfamily protein | ||||
STRING | Pavir.Gb02200.1.p | 4e-90 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59780.1 | 3e-31 | myb domain protein 59 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.7NG055200.2.p |
Publications ? help Back to Top | |||
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