PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.7NG055200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB_related | ||||||||
Protein Properties | Length: 213aa MW: 23863.5 Da PI: 10.2791 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52 | 1.6e-16 | 33 | 77 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g ++++E+ l++++++++G++ W++Iar+++ gRt++++k++w++++ Pavir.7NG055200.1.p 33 GHMSPQEERLIIELHARWGKR-WSRIARRLP-GRTDNEIKNYWRTHM 77 5689*****************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.426 | 12 | 26 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-9 | 12 | 39 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.27E-22 | 12 | 85 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.844 | 27 | 81 | IPR017930 | Myb domain |
SMART | SM00717 | 1.0E-15 | 31 | 79 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.4E-15 | 33 | 76 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.16E-12 | 35 | 77 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.7E-20 | 40 | 78 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MDRAGGHATG LNRTGKSCRL RWVNYLHPGL KHGHMSPQEE RLIIELHARW GKRWSRIARR 60 LPGRTDNEIK NYWRTHMRKK AQERKMNMSP SSSSSSLTYL SCLLDTAPII GMGSGDNHNG 120 SCVTSTLEST QSVMDGYPMD QIWREIEIPQ APALLGIAEG KDKVCSSIPA LCHHLLFGIT 180 NALRYSGRWK MKKSGCWLHN LVMVNKALAI EG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 4e-17 | 13 | 81 | 37 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 4e-17 | 13 | 81 | 37 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.7NG055200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU652463 | 0.0 | EU652463.1 Saccharum officinarum MYB protein (MYBAS1) mRNA, complete cds, alternatively spliced. | |||
GenBank | HM136781 | 0.0 | HM136781.1 Saccharum hybrid cultivar Co 740 MYB transcription factor variant 2 (MYBAS1) mRNA, complete cds. | |||
GenBank | KM387410 | 0.0 | KM387410.1 Saccharum officinarum cultivar Badila R2R3-MYB transcription factor variant 1 mRNA, complete cds, alternatively spliced. | |||
GenBank | KM387411 | 0.0 | KM387411.1 Saccharum officinarum cultivar Badila R2R3-MYB transcription factor variant 2 mRNA, complete cds, alternatively spliced. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004980031.1 | 1e-95 | myb-related protein MYBAS1 | ||||
Swissprot | Q53NK6 | 2e-85 | MYBA1_ORYSJ; Myb-related protein MYBAS1 | ||||
TrEMBL | K3ZJP9 | 3e-94 | K3ZJP9_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Gb02200.1.p | 1e-150 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP636 | 37 | 169 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46130.3 | 4e-52 | myb domain protein 48 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.7NG055200.1.p |
Publications ? help Back to Top | |||
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