PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.7NG053700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 284aa MW: 30959.5 Da PI: 6.5872 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.9 | 1e-09 | 120 | 167 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR+ri +++ L+ l+P + +k Ka iL + ++Y++sLq Pavir.7NG053700.1.p 120 SHSLAERVRRERISERMRVLQALVPGC----DKVTGKALILDEIINYVQSLQ 167 8*************************9....555*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.46E-11 | 114 | 171 | No hit | No description |
SuperFamily | SSF47459 | 2.62E-17 | 114 | 183 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.656 | 116 | 166 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.1E-16 | 116 | 181 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.1E-7 | 120 | 167 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.7E-10 | 122 | 172 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MANFSHLSQH MEHGLANASH AMPSFLFCHG AAAADSTSLE TSSGVLDTSP RGTASVDKKI 60 RKPREDSASL SSAQSKDSNS KESTKKKGGK RERSSKEVDE EEEPKGYIHV RARRGQATDS 120 HSLAERVRRE RISERMRVLQ ALVPGCDKVT GKALILDEII NYVQSLQNQV EFLSMRIASL 180 SPVLYGFGMD SDAFGDHTQK MEGMLNHEVL AMPASVMNRA PSQAIMDTNT STSSPSYDEV 240 HGDGGTGISF PQDNGSYMVQ TVGEPRQELF NQVAFSNHMC SFQ* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.3563 | 0.0 | stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.7NG053700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025803717.1 | 0.0 | transcription factor bHLH137-like | ||||
TrEMBL | A0A2S3H1M2 | 0.0 | A0A2S3H1M2_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7EUH4 | 0.0 | A0A2T7EUH4_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J05063.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2358 | 37 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50915.2 | 2e-37 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.7NG053700.1.p |