PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG053500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 267aa    MW: 27805.6 Da    PI: 11.5466
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG053500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.83.7e-20109158255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ rg+W+AeIrdp   gk +r++lg++ t+eeAa+a++aa+++l+g
  Pavir.7NG053500.1.p 109 RYRGVRRRR-RGKWAAEIRDP---GKAARVWLGTYTTPEEAARAYDAAARRLKG 158
                          69****887.8*********8...545*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.8E-29109166IPR001471AP2/ERF domain
PfamPF008472.2E-13109158IPR001471AP2/ERF domain
SuperFamilySSF541714.38E-21109168IPR016177DNA-binding domain
SMARTSM003804.0E-31109172IPR001471AP2/ERF domain
PROSITE profilePS5103223.709109166IPR001471AP2/ERF domain
PRINTSPR003671.2E-8110121IPR001471AP2/ERF domain
PRINTSPR003671.2E-8132148IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MHGERGAVAP RRGAERAAGP GGSLAHSCYY SAARAHYDVA VVAAALTRVV CAAADPMATP  60
PRGAEAAAAS AMPPAPRPPP LCLRAHRFGI FMGGGGGGGA EAEPPRAQRY RGVRRRRRGK  120
WAAEIRDPGK AARVWLGTYT TPEEAARAYD AAARRLKGAR AKLNFPFSTA APSRPHRHHQ  180
AVTAARLLPA ASPPPLSSPG FAAAAAVEFP GLGQYARILQ SSHADVRTVA SVAPPPVDGH  240
DSDGLHWQQL QQMVNKASHG GIMRLG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-16106167264ATERF1
3gcc_A1e-16106167264ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG053500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008652886.11e-47ethylene-responsive transcription factor 11
TrEMBLA0A1E5V4L23e-52A0A1E5V4L2_9POAL; Uncharacterized protein
STRINGPavir.Ba01557.1.p1e-75(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP164421013
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.11e-09related to AP2 6l