PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG042100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 288aa    MW: 30875 Da    PI: 5.2554
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG042100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.21.7e-1486133355
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +++ ++Er RR+r+N+++  Lr+++P+      +K++Ka+i++ A+ YI +Lq
  Pavir.7NG042100.1.p  86 TKNTAMERDRRRRLNEKLYALRSIVPNI-----TKMDKASIVRDAIAYIEQLQ 133
                          56889**********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.98683132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.01E-1685148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.78E-1686137No hitNo description
PfamPF000102.7E-1286133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-1689138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-1589148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2605.0E-4217275No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MEAADLLGLG FDFYGQSPPR FFDDQPPYEQ DCLAVADSIM YAPTEAESVT GLYPSYREAS  60
NSPDGANSCC AHVAPPASPG PAGAATKNTA MERDRRRRLN EKLYALRSIV PNITKMDKAS  120
IVRDAIAYIE QLQEEERRVL AEISALESSG TATAAAVKFK AQDAAGSYPW PRKRTRTAPG  180
GSSIDAAPPL QILEVQVTEA GEKVAVVSVR CSRGRDAVAK VCRALEPLRL GVVTASIAAA  240
GDAVVHTMFV EIKDTISGAQ LKEKVEAALA QLDVTRCPLK TTRYWED*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG042100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9610231e-54EU961023.1 Zea mays clone 230521 DNA binding like mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823077.11e-178transcription factor bHLH35-like isoform X2
TrEMBLA0A2S3I5H01e-176A0A2S3I5H0_9POAL; Uncharacterized protein
TrEMBLA0A2T7CT191e-176A0A2T7CT19_9POAL; Uncharacterized protein
STRINGPavir.Gb02374.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104438133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.11e-42bHLH family protein