PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG041300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 274aa    MW: 29666.6 Da    PI: 4.6744
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG041300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.51.1e-1371116555
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          + ++Er RR+++N+++  Lr+++P+      +K++Ka+i + A+eYI++Lq
  Pavir.7NG041300.1.p  71 NIIMERDRRRKLNEKLYALRSVVPNI-----TKMDKASIIKDAIEYIQQLQ 116
                          5689*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.32966115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.28E-1370120No hitNo description
SuperFamilySSF474592.62E-1770131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-1171116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-1672121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.5E-1772131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MDAEMGDSYW EETQRYLEYE ELSIYLEAQE DAMSCYDSSS PDGSNSHSSS AAPAGDGKGA  60
GSGAADGANK NIIMERDRRR KLNEKLYALR SVVPNITKMD KASIIKDAIE YIQQLQAEER  120
QVLQEVRALE SAAGAPQAID DEGLLPLEAA ERAKKAKRAR SSVPLSAAAP HGAAPPPPPL  180
EVLELHVSEV GERVLVVSLA CRKRRDAMAR VCRAIEELRL RVITASITSV AGCLMHTVFV  240
EVDEMDGIQM KQMVEAALAQ IDATGSPPSY MSY*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.13810.0leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG041300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0852546e-75BT085254.1 Zea mays full-length cDNA clone ZM_BFb0344G23 mRNA, complete cds.
GenBankEU9556206e-75EU955620.1 Zea mays clone 1539722 DNA binding like mRNA, complete cds.
GenBankKJ7279676e-75KJ727967.1 Zea mays clone pUT6080 bHLH transcription factor (bHLH116) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823098.11e-136transcription factor bHLH35-like
TrEMBLA0A2S3I5L01e-135A0A2S3I5L0_9POAL; Uncharacterized protein
STRINGPavir.Gb02205.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104438133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.13e-42bHLH family protein