PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.7KG434000.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C3H | ||||||||
Protein Properties | Length: 415aa MW: 45031.5 Da PI: 6.2875 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.8 | 2.9e-06 | 366 | 389 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 t++C +f C+ G++C+F H+ Pavir.7KG434000.2.p 366 TKPCAYFNSARGCRNGANCTFLHD 389 899********************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.657 | 363 | 391 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.58E-5 | 365 | 392 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.8E-6 | 366 | 391 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.6E-5 | 366 | 389 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 415 aa Download sequence Send to blast |
MGQRGQSLQA GPSSDDSLPP GFESLQPTNN HKIDISQIPL IRWRCPPQIL YNPDWLVVAG 60 EESVEVGLQN ERMFGALEAI YPRPSNIPPN PFVSPDVKDS YFDDSRTQLV PLIPVEEDDA 120 SDQLEEQSVG PPNSYHQSDK YDSATVRVPQ AADAPFTTAQ KQPNGSINTG SAAGISSEPD 180 AVAAASAAYT AIMQSNQMGN MIDQDLLIKI LSDPAQLERL MKEYGTLKHE QPINSSAPAP 240 MLLGPLPQMT TSAPVSFPDR MTTFHNINPA LPPPPVMNRL PPAVPSVGMN PPASSSQAVN 300 FSNVPGRGID YYKTLIHQHG GERQEPLQQH GMQFGMHHHS VPSQTSTIDV VSNGTMPGRE 360 TKQRPTKPCA YFNSARGCRN GANCTFLHDV SAARKEQPKG SKRIKLDSRI AGRY* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.5536 | 0.0 | callus| leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.7KG434000.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025823312.1 | 0.0 | zinc finger CCCH domain-containing protein 30 | ||||
Swissprot | Q7XM16 | 1e-140 | C3H30_ORYSJ; Zinc finger CCCH domain-containing protein 30 | ||||
TrEMBL | A0A3L6PXN5 | 0.0 | A0A3L6PXN5_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Ga00146.1.p | 0.0 | (Panicum virgatum) |
Link Out ? help Back to Top | |
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Phytozome | Pavir.7KG434000.2.p |
Publications ? help Back to Top | |||
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