PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG427500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 167aa    MW: 17757.6 Da    PI: 5.044
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG427500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22e-18655255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                         +++GVr+++ +g+Wv+eIr+p        +r++lg++ tae+Aa+a+++a++ + g
  Pavir.7KG427500.1.p  6 RFRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTYETAEDAARAYDEAARLMSG 55
                         69******9.**********8.....334**********************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.47E-30565No hitNo description
SMARTSM003802.2E-38669IPR001471AP2/ERF domain
PfamPF008474.1E-11653IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-20664IPR016177DNA-binding domain
PROSITE profilePS5103220.85663IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.0E-33664IPR001471AP2/ERF domain
PRINTSPR003671.8E-10718IPR001471AP2/ERF domain
PRINTSPR003671.8E-102945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MPKLQRFRGV RQRHWGSWVS EIRHPLLKTR IWLGTYETAE DAARAYDEAA RLMSGPAART  60
NFPPSSGAVG ILSPTLRAKL ENCCTEESPS KQPAQDGGAD ASGAPERDGG GGAGQELQGV  120
KAETGDDDEY IEEMIRELTY YGPVEIQHPS GSSGAAPACS SSPAIR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-15363263ATERF1
3gcc_A3e-15363263ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG427500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1083559e-45AK108355.1 Oryza sativa Japonica Group cDNA clone:002-142-C04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823817.13e-96ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW52e-45ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A2S3IB516e-95A0A2S3IB51_9POAL; Uncharacterized protein
TrEMBLA0A2T7D0Y46e-95A0A2T7D0Y4_9POAL; Uncharacterized protein
STRINGPavir.Ga00062.1.p1e-115(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141835118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.12e-29ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]