PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG399200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 448aa    MW: 46648 Da    PI: 7.1431
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG399200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH154.4e-053363731254
                          HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          R +++ +++  L++l+ +      +K + a++L +++eYIk L
  Pavir.7KG399200.1.p 336 RKEKLGDRITALQQLVSPF-----GKTDTASVLHETIEYIKFL 373
                          677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.182324373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-8334383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.73E-5334377No hitNo description
SuperFamilySSF474595.37E-11334390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MGDHAEMLHA APAVVYSGAG AGGAAPHGGG WWNAAVPAPT CSTDLAGFGT WSAALSASYD  60
IAVEGGNKAK SATTASSESP GNNSSVTFQE PAGVADPVVG IGAAVHQQPL AAGYTDWTNN  120
PYMSGGATLH GFLQDCHQDM SSRTEQQSPM AASSLVNPAS NNLALQGHHQ EQDHHHQQLL  180
SSFGSDLLLS PTSPYGFQSS SLLRSLMEPT APAAAKTALP GFQQYDQYGQ QAAPAVARFA  240
PGAIREPLQF TNDAPFWNSS AAGFGVPAAA AAPDHASVRS VKPSPAPRAA TLALKTALEG  300
VGESSSITTK KKANGEPAFK KPRLQTPSPL PTFKVRKEKL GDRITALQQL VSPFGKTDTA  360
SVLHETIEYI KFLHDQVGAL SAPYLKNGHQ VHVPQLQSSS PEKSKDSHGQ ISLKGRGLCL  420
VPISSTFAVA TSEVPVDFWT PFGANFR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG399200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822972.10.0transcription factor bHLH112-like
TrEMBLA0A2T7D0H70.0A0A2T7D0H7_9POAL; Uncharacterized protein
STRINGPavir.Ga00384.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22163787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.34e-49bHLH family protein