PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.7KG397100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 177aa MW: 19144 Da PI: 9.7949 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 15.1 | 4.3e-05 | 66 | 103 | 12 | 54 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +++eYIk L Pavir.7KG397100.1.p 66 RKEKLGDRITALQQLVSPF-----GKTDTASVLHETIEYIKIL 103 77788899********998.....8***************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.642 | 54 | 103 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.53E-11 | 64 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.23E-5 | 64 | 107 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 8.7E-8 | 64 | 113 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MMDRLLTDGL VSSTGFLLPS PDKFSTSLEG VGESSSIINK KKANGEHAFK KPMLQTPSPL 60 PTFKVRKEKL GDRITALQQL VSPFGKTDTA SVLHETIEYI KILHDQVGAL SAPYLKNGHQ 120 VHVPQLKSSS PEKSKDSHGE ISLKGRGLCL VPISSTFAVA SEVPVDFWTP FGANFR* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.11438 | 0.0 | leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.7KG397100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT068256 | 5e-99 | BT068256.1 Zea mays full-length cDNA clone ZM_BFb0111F04 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025822972.1 | 2e-97 | transcription factor bHLH112-like | ||||
Swissprot | Q94JL3 | 5e-49 | BH112_ARATH; Transcription factor bHLH112 | ||||
TrEMBL | A0A2T7D0H7 | 2e-96 | A0A2T7D0H7_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J13928.1.p | 2e-95 | (Panicum virgatum) | ||||
STRING | Si010139m | 1e-91 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2216 | 37 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61660.3 | 2e-51 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.7KG397100.1.p |
Publications ? help Back to Top | |||
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