PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG389300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family G2-like
Protein Properties Length: 449aa    MW: 48789.3 Da    PI: 7.9935
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG389300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.65.1e-32259313155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          k+r+rWt++LHerFv++v+qLGG++kAtPk il+lm+  gLt++h+kSHLQkYR+
  Pavir.7KG389300.1.p 259 KTRIRWTQDLHERFVDCVNQLGGADKATPKGILKLMNSGGLTIYHIKSHLQKYRI 313
                          68****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.285256316IPR017930Myb domain
SuperFamilySSF466891.0E-17257313IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-29258314IPR009057Homeodomain-like
TIGRFAMsTIGR015573.3E-23259314IPR006447Myb domain, plants
PfamPF002498.3E-9263312IPR001005SANT/Myb domain
PfamPF143791.1E-22344390IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MRCLQVLVQF QAFVILMMNA QKIKLHDHHY GSPLCNPQMF PAAAAAGLSF HPRLVSSLPQ  60
QHGGAVSWLH EEYSPTPRTV PATQGSCVGA DTAAFFAAEH LLGMPRFDLP LGTTTPPATM  120
TTAKTPPFVR SPEAEQLYRP VDPMLLRDNS VRTYYVRPQQ RDAPEAPPAL KLPLQQQQQE  180
RGYALYGNGS TGRLLGGDPK AHSFSPHVTA NTLLPAMEAP PGMQSPTENP LSRSCSIGAP  240
GTHAGNVVAA SGHGGAPSKT RIRWTQDLHE RFVDCVNQLG GADKATPKGI LKLMNSGGLT  300
IYHIKSHLQK YRIAKYMPAS TSEGKQEKRS AGNDAQNLDP STGMQITEAL RVQLDVQRRL  360
HEQLEIQRNL QLRIEAQGKK LQKMFEEQLK ASRTVMEPPP EEHTVQGVGA GAFAGVGEQD  420
DEDAFDDVQL LSVDGSGYSD ARFPSKIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A9e-22259316158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B9e-22259316158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C9e-22259316158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D9e-22259316158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG389300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0685131e-172BT068513.1 Zea mays full-length cDNA clone ZM_BFb0272J03 mRNA, complete cds.
GenBankEU9574861e-172EU957486.1 Zea mays clone 1594418 transfactor mRNA, complete cds.
GenBankKJ7268311e-172KJ726831.1 Zea mays clone pUT3371 G2-like transcription factor (GLK52) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822779.10.0probable transcription factor KAN2
RefseqXP_025822780.10.0probable transcription factor KAN2
TrEMBLA0A2S3IBB00.0A0A2S3IBB0_9POAL; Uncharacterized protein
STRINGPavir.Ga00160.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69333751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.11e-63G2-like family protein