PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.7KG382800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C3H | ||||||||
Protein Properties | Length: 693aa MW: 77347 Da PI: 4.9952 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.1 | 2.6e-07 | 106 | 129 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +f++ G C GdrC+F Hgp Pavir.7KG382800.1.p 106 MVPCYYFQK-GNCLKGDRCPFYHGP 129 789******.*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 10.981 | 22 | 51 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0014 | 22 | 50 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF15663 | 3.9E-12 | 24 | 78 | No hit | No description |
PROSITE profile | PS50103 | 11.31 | 53 | 79 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.4 | 55 | 78 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.051 | 103 | 130 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.1E-6 | 103 | 129 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.63E-6 | 104 | 128 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.3E-4 | 107 | 129 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 0.27 | 108 | 128 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 693 aa Download sequence Send to blast |
MEAGGAAEAG GAKPLTPEEE ALRRSTDCVY FLASPLTCKK GNECDFRHSE GARMNPRDCW 60 YWLNGSCLNP KCSFRHPPID GLFGAPTPGI PPVPSNYGAY SSGKQMVPCY YFQKGNCLKG 120 DRCPFYHGPQ VAGNNPTDQA VKVSSLPLEL PQAKKNEESA APNNLTPQGA RITDDRTTMV 180 HIGKSGVGAT PTELASNAVK SRPNSEQAPN STPAAKKSFT IEEDHPMHYQ NQLPVEGDSV 240 QDWNQNFQMP ATDDLPQNSR EAEDFLGESS PGFDVLVDND ADGAAYLHDE EDFGRDMYPV 300 EDYEYAPADF DTQAHHESVQ FNGMGENGQI GQLYGDYDRK RRRSSSERSI DRPFHPDRRF 360 PHRGLDRDEI DGSDLRHQLR RRRISGPSTA ISPERANGGR HWRGEHYRER AYGGHHMHND 420 RRQGPRGSTL SSRLQARIKL PGRSPDRVET RFEDERDRRL RERFSPARRA DFHGGRNREP 480 GQHQERSHRI SSELVSSVRH ADGLSIRRDA VDSARFPGRR NLGEPRKANG FAESEASLDF 540 EGPKPLSVIL QRKREAAGGN NSSFSNEKSS EVTVMQTGSL VESEKKGCDN IIMSEDCKSG 600 LGDEEYKEED HIPEGHGQSS SHGDKFEVED AAEVDPEGIQ EADNYDQREG ESDDYETIEG 660 HDYKSEDENA YQDDEDLDDD DDFARKVGVV FS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 338 | 342 | RKRRR |
2 | 338 | 343 | RKRRRS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.7131 | 0.0 | callus| leaf| root| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.7KG382800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025823987.1 | 0.0 | zinc finger CCCH domain-containing protein 32-like | ||||
Swissprot | Q0J952 | 0.0 | C3H32_ORYSJ; Zinc finger CCCH domain-containing protein 32 | ||||
TrEMBL | A0A3L6Q5H4 | 0.0 | A0A3L6Q5H4_PANMI; Zinc finger CCCH domain-containing protein 32-like | ||||
STRING | Pavir.Ga00204.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6604 | 32 | 41 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.7KG382800.1.p |
Publications ? help Back to Top | |||
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