PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG382600.4.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ARF
Protein Properties Length: 806aa    MW: 89878.8 Da    PI: 6.6079
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG382600.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.32.5e-22152252198
                          EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                          f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d +  +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F 
  Pavir.7KG382600.4.p 152 FCKTLTASDTSTHGGFSVPRRAAERVfppldftQQPPAQ--ELIARDIHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI 239
                          99***********************9*****86555544..8************************************************ PP

                          E-SSSEE..EEEEE- CS
                   B3  84 ldgrsefelvvkvfr 98 
                            ++++ +l+++++ 
  Pavir.7KG382600.4.p 240 --WNEKNQLLLGIRH 252
                          ..8888889999986 PP
2Auxin_resp112.73.6e-37278361183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                          aahaa+t+s F+++YnPras+seFv++++k+ ka+  +++svGmRf+m fete+ss rr++Gt++ vsd+dpvrWp S Wrs+k
  Pavir.7KG382600.4.p 278 AAHAAATNSRFTIFYNPRASPSEFVIPLSKYIKAVFhTRISVGMRFRMLFETEESSVRRYMGTITEVSDADPVRWPSSYWRSVK 361
                          79*******************************986599******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.19E-48137281IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.0E-41144267IPR015300DNA-binding pseudobarrel domain
CDDcd100178.50E-21151244No hitNo description
PROSITE profilePS5086312.012152254IPR003340B3 DNA binding domain
SMARTSM010198.3E-23152254IPR003340B3 DNA binding domain
PfamPF023622.1E-20152253IPR003340B3 DNA binding domain
PfamPF065071.5E-32278361IPR010525Auxin response factor
SuperFamilySSF542771.31E-7700781No hitNo description
PfamPF023092.0E-7700790IPR033389AUX/IAA domain
PROSITE profilePS5174524.037706790IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 806 aa     Download sequence    Send to blast
MSSSSAASIG QTQPPPPEEE KKCLNSELWH ACAGPLVCLP TVGTRVVYFP QGHSEQVSSG  60
LAPWCRSTTW RRPDECKVAA STNKEVDGHI PNYPNLPPQL ICQLHDVTMH ADVESDEVYA  120
QMTLQPLNPQ EQNDAYLPAE MGIMSKQPTN YFCKTLTASD TSTHGGFSVP RRAAERVFPP  180
LDFTQQPPAQ ELIARDIHDV EWKFRHIFRG QPKRHLLTTG WSVFVSAKRL VAGDSVLFIW  240
NEKNQLLLGI RHASRPQTVM PSSVLSSDSM HIGLLAAAAH AAATNSRFTI FYNPRASPSE  300
FVIPLSKYIK AVFHTRISVG MRFRMLFETE ESSVRRYMGT ITEVSDADPV RWPSSYWRSV  360
KVGWDESTAG ERPPRVSLWE IEPLTTFPMY PSLFPLRVKH PWYSGVAALH GSWGQQRLHP  420
SLLSNDHDQY QAVVAAAAAS QSGGYLKQQF LHLQQPMQSP QEQCNLNPLL QQQIMQQASQ  480
QQLVSPDSQN MQSVLSPSSI QQQLHQLQQM QHAHNDQKQK IQPDQPYQVP SSAVLPSPTS  540
LPSHLREKFG FSDPNVNSSS YISSSIHENM LESNFLQGSS KCVDLSRFNQ PLVSEQQQQQ  600
AWKQKFMGSQ SMSFGGSGSL NSPTSKDGSV DNKVGHDGQN QSLFSPQVDN SSLLYNMVPN  660
LTSNVADNNI SAIPSGSTYL QNPTYGCLDD SSGLLQNTGE NDPTTRTFVK VYKSGSVGRS  720
LDITRFSNYA ELREELGQMF GIKGQLDDPD RSGWQLVFVD RENDVLLLGD DPWESFVNSV  780
WYIKILSPED VHKMGKQGND PRYLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1552038247388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.56260.0callus| leaf| root| stem
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00033PBMTransfer from AT5G37020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG382600.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0698220.0BT069822.1 Zea mays full-length cDNA clone ZM_BFb0290E10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008662154.10.0uncharacterized protein LOC100382863 isoform X2
SwissprotQ258Y50.0ARFL_ORYSI; Auxin response factor 12
TrEMBLA0A2T7D1J30.0A0A2T7D1J3_9POAL; Auxin response factor
STRINGPavir.Ga00205.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.20.0auxin response factor 8