PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG382600.3.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ARF
Protein Properties Length: 813aa    MW: 90424.3 Da    PI: 6.3446
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG382600.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.32.5e-22131231198
                          EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                          f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d +  +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F 
  Pavir.7KG382600.3.p 131 FCKTLTASDTSTHGGFSVPRRAAERVfppldftQQPPAQ--ELIARDIHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI 218
                          99***********************9*****86555544..8************************************************ PP

                          E-SSSEE..EEEEE- CS
                   B3  84 ldgrsefelvvkvfr 98 
                            ++++ +l+++++ 
  Pavir.7KG382600.3.p 219 --WNEKNQLLLGIRH 231
                          ..8888889999986 PP
2Auxin_resp112.63.7e-37257340183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                          aahaa+t+s F+++YnPras+seFv++++k+ ka+  +++svGmRf+m fete+ss rr++Gt++ vsd+dpvrWp S Wrs+k
  Pavir.7KG382600.3.p 257 AAHAAATNSRFTIFYNPRASPSEFVIPLSKYIKAVFhTRISVGMRFRMLFETEESSVRRYMGTITEVSDADPVRWPSSYWRSVK 340
                          79*******************************986599******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.32E-48116260IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.1E-41123246IPR015300DNA-binding pseudobarrel domain
CDDcd100178.64E-21130223No hitNo description
PROSITE profilePS5086312.012131233IPR003340B3 DNA binding domain
SMARTSM010198.3E-23131233IPR003340B3 DNA binding domain
PfamPF023622.1E-20131232IPR003340B3 DNA binding domain
PfamPF065071.5E-32257340IPR010525Auxin response factor
SuperFamilySSF542771.31E-7707788No hitNo description
PfamPF023092.0E-7707797IPR033389AUX/IAA domain
PROSITE profilePS5174524.037713797IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 813 aa     Download sequence    Send to blast
MSSSSAASIG QTQPPPPEEE KKCLNSELWH ACAGPLVCLP TVGTRVVYFP QGHSEQVAAS  60
TNKEVDGHIP NYPNLPPQLI CQLHDVTMHA DVESDEVYAQ MTLQPLNPQE QNDAYLPAEM  120
GIMSKQPTNY FCKTLTASDT STHGGFSVPR RAAERVFPPL DFTQQPPAQE LIARDIHDVE  180
WKFRHIFRGQ PKRHLLTTGW SVFVSAKRLV AGDSVLFIWN EKNQLLLGIR HASRPQTVMP  240
SSVLSSDSMH IGLLAAAAHA AATNSRFTIF YNPRASPSEF VIPLSKYIKA VFHTRISVGM  300
RFRMLFETEE SSVRRYMGTI TEVSDADPVR WPSSYWRSVK VGWDESTAGE RPPRVSLWEI  360
EPLTTFPMYP SLFPLRVKHP WYSGVAALHD ESNALMWLRG VAGEGGFQSL NFQSPGIGSW  420
GQQRLHPSLL SNDHDQYQAV VAAAAASQSG GYLKQQFLHL QQPMQSPQEQ CNLNPLLQQQ  480
IMQQASQQQL VSPDSQNMQS VLSPSSIQQQ LHQLQQMQHA HNDQKQKIQP DQPYQVPSSA  540
VLPSPTSLPS HLREKFGFSD PNVNSSSYIS SSIHENMLES NFLQGSSKCV DLSRFNQPLV  600
SEQQQQQAWK QKFMGSQSMS FGGSGSLNSP TSKDGSVDNK VGHDGQNQSL FSPQVDNSSL  660
LYNMVPNLTS NVADNNISAI PSGSTYLQNP TYGCLDDSSG LLQNTGENDP TTRTFVKVYK  720
SGSVGRSLDI TRFSNYAELR EELGQMFGIK GQLDDPDRSG WQLVFVDREN DVLLLGDDPW  780
ESFVNSVWYI KILSPEDVHK MGKQGNDPRY LS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1612036147388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.56260.0callus| leaf| root| stem
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00033PBMTransfer from AT5G37020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG382600.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823846.10.0auxin response factor 12
SwissprotQ258Y50.0ARFL_ORYSI; Auxin response factor 12
TrEMBLA0A2T7D1J30.0A0A2T7D1J3_9POAL; Auxin response factor
STRINGPavir.Ga00205.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.20.0auxin response factor 8