PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.7KG382600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ARF | ||||||||
Protein Properties | Length: 834aa MW: 92842 Da PI: 6.4763 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 70.2 | 2.6e-22 | 152 | 252 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f+k+lt sd++++g +++p++ ae+ ++++++ +l+ +d + +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F Pavir.7KG382600.1.p 152 FCKTLTASDTSTHGGFSVPRRAAERVfppldftQQPPAQ--ELIARDIHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI 239 99***********************9*****86555544..8************************************************ PP E-SSSEE..EEEEE- CS B3 84 ldgrsefelvvkvfr 98 ++++ +l+++++ Pavir.7KG382600.1.p 240 --WNEKNQLLLGIRH 252 ..8888889999986 PP | |||||||
2 | Auxin_resp | 112.6 | 3.8e-37 | 278 | 361 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPras+seFv++++k+ ka+ +++svGmRf+m fete+ss rr++Gt++ vsd+dpvrWp S Wrs+k Pavir.7KG382600.1.p 278 AAHAAATNSRFTIFYNPRASPSEFVIPLSKYIKAVFhTRISVGMRFRMLFETEESSVRRYMGTITEVSDADPVRWPSSYWRSVK 361 79*******************************986599******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.45E-48 | 137 | 281 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.3E-41 | 144 | 267 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.07E-21 | 151 | 244 | No hit | No description |
PROSITE profile | PS50863 | 12.012 | 152 | 254 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.2E-20 | 152 | 253 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.3E-23 | 152 | 254 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.6E-32 | 278 | 361 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 2.1E-7 | 728 | 818 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 1.31E-7 | 728 | 809 | No hit | No description |
PROSITE profile | PS51745 | 24.037 | 734 | 818 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 834 aa Download sequence Send to blast |
MSSSSAASIG QTQPPPPEEE KKCLNSELWH ACAGPLVCLP TVGTRVVYFP QGHSEQVSSG 60 LAPWCRSTTW RRPDECKVAA STNKEVDGHI PNYPNLPPQL ICQLHDVTMH ADVESDEVYA 120 QMTLQPLNPQ EQNDAYLPAE MGIMSKQPTN YFCKTLTASD TSTHGGFSVP RRAAERVFPP 180 LDFTQQPPAQ ELIARDIHDV EWKFRHIFRG QPKRHLLTTG WSVFVSAKRL VAGDSVLFIW 240 NEKNQLLLGI RHASRPQTVM PSSVLSSDSM HIGLLAAAAH AAATNSRFTI FYNPRASPSE 300 FVIPLSKYIK AVFHTRISVG MRFRMLFETE ESSVRRYMGT ITEVSDADPV RWPSSYWRSV 360 KVGWDESTAG ERPPRVSLWE IEPLTTFPMY PSLFPLRVKH PWYSGVAALH DESNALMWLR 420 GVAGEGGFQS LNFQSPGIGS WGQQRLHPSL LSNDHDQYQA VVAAAAASQS GGYLKQQFLH 480 LQQPMQSPQE QCNLNPLLQQ QIMQQASQQQ LVSPDSQNMQ SVLSPSSIQQ QLHQLQQMQH 540 AHNDQKQKIQ PDQPYQVPSS AVLPSPTSLP SHLREKFGFS DPNVNSSSYI SSSIHENMLE 600 SNFLQGSSKC VDLSRFNQPL VSEQQQQQAW KQKFMGSQSM SFGGSGSLNS PTSKDGSVDN 660 KVGHDGQNQS LFSPQVDNSS LLYNMVPNLT SNVADNNISA IPSGSTYLQN PTYGCLDDSS 720 GLLQNTGEND PTTRTFVKVY KSGSVGRSLD ITRFSNYAEL REELGQMFGI KGQLDDPDRS 780 GWQLVFVDRE NDVLLLGDDP WESFVNSVWY IKILSPEDVH KMGKQGNDPR YLS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-155 | 20 | 382 | 47 | 388 | Auxin response factor 5 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.5626 | 0.0 | callus| leaf| root| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00033 | PBM | Transfer from AT5G37020 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.7KG382600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004960120.1 | 0.0 | auxin response factor 12 | ||||
Refseq | XP_022680824.1 | 0.0 | auxin response factor 12 | ||||
Swissprot | Q258Y5 | 0.0 | ARFL_ORYSI; Auxin response factor 12 | ||||
TrEMBL | A0A2T7D1J3 | 0.0 | A0A2T7D1J3_9POAL; Auxin response factor | ||||
STRING | Pavir.Ga00205.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5850 | 30 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G37020.2 | 0.0 | auxin response factor 8 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.7KG382600.1.p |