PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.7KG375200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB | ||||||||
Protein Properties | Length: 299aa MW: 30921.2 Da PI: 5.8702 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.4 | 1.6e-08 | 18 | 65 | 2 | 45 |
SSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg.....tWktIartmgkgRtlkqcksrwq 45 g+WT e ++ + +a++ + + +W++Ia+ + g+t+ +++ ++ Pavir.7KG375200.1.p 18 GAWTREQEKAFENAIATMAEEadgdaRWEKIAEAVE-GKTADEVRQHYE 65 68*****************99***************.**********95 PP | |||||||
2 | Myb_DNA-binding | 39.8 | 1e-12 | 126 | 170 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ l++ + +++G+g+W++I+r + Rt+ q+ s+ qky Pavir.7KG375200.1.p 126 AWTEDEHRLFLLGLEKYGKGDWRSISRNFVISRTPTQVASHAQKY 170 6*****************************99************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 7.0E-6 | 16 | 70 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-6 | 18 | 65 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 7.236 | 18 | 68 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 3.8E-5 | 18 | 65 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.3E-9 | 20 | 74 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.49E-7 | 20 | 68 | No hit | No description |
PROSITE profile | PS51294 | 16.605 | 119 | 175 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.02E-16 | 121 | 176 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.7E-17 | 123 | 173 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 9.3E-11 | 123 | 173 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.3E-11 | 126 | 170 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.14E-10 | 126 | 171 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.6E-11 | 126 | 169 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MAVAEASSSG GGGEEGYGAW TREQEKAFEN AIATMAEEAD GDARWEKIAE AVEGKTADEV 60 RQHYELLVED VEGIDAGRVP LPTYAVDGGA EEGGGGGGKK GGGGGGAHGE KGSAKSAEQE 120 RRKGIAWTED EHRLFLLGLE KYGKGDWRSI SRNFVISRTP TQVASHAQKY FIRLNSMNRE 180 RRRSSIHDIT SVNGDASAAQ GPITGQTNGQ AANPGKPSKQ SPQPANTPPG VDAYGTTIGQ 240 PVGGPLVSAV GTPVTLPVQA PPHMAYGMHA PVPGAVVPGA PVNIALMPYP MPPPSSHG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 8e-16 | 20 | 89 | 11 | 78 | RADIALIS |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 96 | 104 | GGKKGGGGG |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.13353 | 0.0 | leaf| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young seedlings, developing leaves, sepals and trichomes. {ECO:0000269|PubMed:26243618}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.7KG375200.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT054809 | 0.0 | BT054809.1 Zea mays full-length cDNA clone ZM_BFb0071C23 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025823483.1 | 1e-164 | transcription factor SRM1 | ||||
Swissprot | Q9FNN6 | 1e-101 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | A0A3L6PSD7 | 1e-164 | A0A3L6PSD7_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Ga00233.1.p | 1e-171 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6376 | 38 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 7e-87 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.7KG375200.1.p |
Publications ? help Back to Top | |||
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