PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG357600.4.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 570aa    MW: 63159.1 Da    PI: 6.4494
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG357600.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM156.41.2e-482273551129
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          lppGfrFhPtd el v+yLk+k+ gk+l++ ++i+e+d+yk+ PwdLp+  ++++++  wyfF++rd+ky++g r+nr+t  gyWkatgk
  Pavir.7KG357600.4.p 227 LPPGFRFHPTDVELTVYYLKRKLLGKHLRC-NAITEIDLYKFAPWDLPEkaSLESNDLVWYFFCPRDRKYSSGLRTNRSTGVGYWKATGK 315
                          79****************************.89***************52355556669******************************* PP

                  NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                          d++v+  ++++vg+k+tLvf+ g+ p+g +tdWvm eyrle
  Pavir.7KG357600.4.p 316 DRPVFY-NSRTVGMKRTLVFHLGKPPRGDRTDWVMYEYRLE 355
                          ******.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-60221377IPR003441NAC domain
PROSITE profilePS5100555.012227377IPR003441NAC domain
PfamPF023651.2E-25228354IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MCVVDEMKTE AQRKQAAFRP IRSGPAEALP ILIGRWGAAG RNRGRGREEE EDGGARAEQR  60
SGGSAALRRP WCLSSKLLCA PSLWLSWGGG GGAAIHCNPP QLHLRTCRHG GFRGSAPSPT  120
ADASPSTFRC LLISQKRIAP AFSGVDATDA SGAPQYFDIG LNTWQSLLYC TLQISLPCCF  180
NQGRFFFSNY NQTFSFFISN FVSLYYLFYI LLLKEDRNIL PMAKTSLPPG FRFHPTDVEL  240
TVYYLKRKLL GKHLRCNAIT EIDLYKFAPW DLPEKASLES NDLVWYFFCP RDRKYSSGLR  300
TNRSTGVGYW KATGKDRPVF YNSRTVGMKR TLVFHLGKPP RGDRTDWVMY EYRLEDEELV  360
ASGVKLDACV LCKIFQKSGP GPKIGAQYGA PFNEEDWNDA SNAECSPFAS SKAPCAPESS  420
HESNNEHAVN HVHPYRPSSN IPIDSIHIQL LAEIIRCSST NLRCTAAEDG SLPDSTAGHD  480
DDGESGDDIE TIFCGVDELA SQPLVNNSNH CDSCEHLIHR MPEARGTEQY LELNDLSFSL  540
AEGPDSRGML LSNEISVEQP LDLEPSVRG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-5122337711168Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.186530.0callus| leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG357600.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0683710.0BT068371.1 Zea mays full-length cDNA clone ZM_BFb0135E15 mRNA, complete cds.
GenBankBT0685320.0BT068532.1 Zea mays full-length cDNA clone ZM_BFb0292O13 mRNA, complete cds.
GenBankBT0839010.0BT083901.1 Zea mays full-length cDNA clone ZM_BFb0052I14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823524.10.0NAC domain-containing protein 82-like
RefseqXP_025823525.10.0NAC domain-containing protein 82-like
RefseqXP_025823526.10.0NAC domain-containing protein 82-like
RefseqXP_025823527.10.0NAC domain-containing protein 82-like
TrEMBLA0A3L6PX500.0A0A3L6PX50_PANMI; Uncharacterized protein
STRINGPavir.Ga00269.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09330.41e-78NAC domain containing protein 82