PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.7KG357600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 626aa MW: 68869.3 Da PI: 6.1686 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 156.2 | 1.4e-48 | 227 | 355 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGfrFhPtd el v+yLk+k+ gk+l++ ++i+e+d+yk+ PwdLp+ ++++++ wyfF++rd+ky++g r+nr+t gyWkatgk Pavir.7KG357600.1.p 227 LPPGFRFHPTDVELTVYYLKRKLLGKHLRC-NAITEIDLYKFAPWDLPEkaSLESNDLVWYFFCPRDRKYSSGLRTNRSTGVGYWKATGK 315 79****************************.89***************52355556669******************************* PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 d++v+ ++++vg+k+tLvf+ g+ p+g +tdWvm eyrle Pavir.7KG357600.1.p 316 DRPVFY-NSRTVGMKRTLVFHLGKPPRGDRTDWVMYEYRLE 355 ******.999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.92E-60 | 221 | 377 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.012 | 227 | 377 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-25 | 228 | 354 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 626 aa Download sequence Send to blast |
MCVVDEMKTE AQRKQAAFRP IRSGPAEALP ILIGRWGAAG RNRGRGREEE EDGGARAEQR 60 SGGSAALRRP WCLSSKLLCA PSLWLSWGGG GGAAIHCNPP QLHLRTCRHG GFRGSAPSPT 120 ADASPSTFRC LLISQKRIAP AFSGVDATDA SGAPQYFDIG LNTWQSLLYC TLQISLPCCF 180 NQGRFFFSNY NQTFSFFISN FVSLYYLFYI LLLKEDRNIL PMAKTSLPPG FRFHPTDVEL 240 TVYYLKRKLL GKHLRCNAIT EIDLYKFAPW DLPEKASLES NDLVWYFFCP RDRKYSSGLR 300 TNRSTGVGYW KATGKDRPVF YNSRTVGMKR TLVFHLGKPP RGDRTDWVMY EYRLEDEELV 360 ASGVKLDACV LCKIFQKSGP GPKIGAQYGA PFNEEDWNDA SNAECSPFAS SKAPCAPESS 420 HGGLNSAGQH LAVSYDDKVS LPLLSESNNE HAVNHVHPYR PSSNIPIDSI HIQLLAEIIR 480 CSSTNLRCTA AEDGSLPDST AGHDDDGESG DDIETIFCGV DELASQPLVN NSNHCDSCEH 540 LIHRMPEARG TEQYLELNDL SFSLAEGPDS RGMLLSNEIS VEQPLDLEPR FERDSLGCIS 600 NTVNTSTSTA DGSFPSACAV DVHGT* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-51 | 223 | 377 | 11 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Pvr.18653 | 0.0 | callus| leaf| stem |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.7KG357600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025823524.1 | 0.0 | NAC domain-containing protein 82-like | ||||
Refseq | XP_025823525.1 | 0.0 | NAC domain-containing protein 82-like | ||||
Refseq | XP_025823526.1 | 0.0 | NAC domain-containing protein 82-like | ||||
Refseq | XP_025823527.1 | 0.0 | NAC domain-containing protein 82-like | ||||
TrEMBL | A0A3L6PX50 | 0.0 | A0A3L6PX50_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Ga00269.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14856 | 17 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G09330.4 | 2e-78 | NAC domain containing protein 82 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.7KG357600.1.p |