PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.7KG349300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 304aa MW: 33070.3 Da PI: 8.1324 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 162.7 | 1.4e-50 | 11 | 146 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGfrFhP+d+elv +yL++k++g ++ +vd++k+ePw+Lp ++ +++ewyfFs +d+kyatg+r+nrat+sgyWkatgk Pavir.7KG349300.1.p 11 LPPGFRFHPRDDELVLDYLCHKLSGGGggAYGGIAMVDVDLNKCEPWELPDEACVGSREWYFFSLHDRKYATGQRTNRATRSGYWKATGK 100 79**********************999543333469999***********76667899******************************** PP NAM 89 dkevlsk......kgelvglkktLvfykgrapkgektdWvmheyrl 128 d+++ + + vg++ktLvfy+grap+g+kt+Wvmhe+r+ Pavir.7KG349300.1.p 101 DRPISISgrrgggAATMVGMRKTLVFYQGRAPRGSKTEWVMHEFRV 146 *****986665444445***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.88E-56 | 3 | 173 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.615 | 11 | 173 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.4E-26 | 12 | 146 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MSLISMMEAR LPPGFRFHPR DDELVLDYLC HKLSGGGGGA YGGIAMVDVD LNKCEPWELP 60 DEACVGSREW YFFSLHDRKY ATGQRTNRAT RSGYWKATGK DRPISISGRR GGGAATMVGM 120 RKTLVFYQGR APRGSKTEWV MHEFRVEGPA VAVAGRPCSP PKEDWVLCRV FYKSRTTTVR 180 PASTDETASL SSELISLPLP HMPPAADAYL AFDRGAAAAI DGYCRQRQGD TGLPAALQHQ 240 SALPLDRSLS SSRDLLMSSM VQGSDGGGAI AKAELHQDWT EAAYAQQQQQ HGAQAWNPFL 300 SSG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-50 | 6 | 173 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-50 | 6 | 173 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-50 | 6 | 173 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-50 | 6 | 173 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 7e-50 | 6 | 173 | 15 | 168 | NAC domain-containing protein 19 |
3swm_B | 7e-50 | 6 | 173 | 15 | 168 | NAC domain-containing protein 19 |
3swm_C | 7e-50 | 6 | 173 | 15 | 168 | NAC domain-containing protein 19 |
3swm_D | 7e-50 | 6 | 173 | 15 | 168 | NAC domain-containing protein 19 |
3swp_A | 7e-50 | 6 | 173 | 15 | 168 | NAC domain-containing protein 19 |
3swp_B | 7e-50 | 6 | 173 | 15 | 168 | NAC domain-containing protein 19 |
3swp_C | 7e-50 | 6 | 173 | 15 | 168 | NAC domain-containing protein 19 |
3swp_D | 7e-50 | 6 | 173 | 15 | 168 | NAC domain-containing protein 19 |
4dul_A | 6e-50 | 6 | 173 | 12 | 165 | NAC domain-containing protein 19 |
4dul_B | 6e-50 | 6 | 173 | 12 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.18171 | 1e-33 | stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in the root tip and in lateral root initiation sites. Also detected in expanding cotyledon, and in leaf primordia. {ECO:0000269|PubMed:11114891}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.7KG349300.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU963031 | 0.0 | EU963031.1 Zea mays clone 247548 NAC domain-containing protein 21/22 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025824710.1 | 1e-177 | NAC domain-containing protein 21/22-like | ||||
Swissprot | Q84TE6 | 1e-72 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A2S3IAF0 | 1e-175 | A0A2S3IAF0_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ga00022.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1012 | 37 | 138 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56010.2 | 2e-71 | NAC domain containing protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.7KG349300.1.p |