PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.7KG349000.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 187aa MW: 21377.2 Da PI: 9.7441 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 55.6 | 9.2e-18 | 22 | 68 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+ellP++ +K +K+++L +A++Y+ksLq Pavir.7KG349000.3.p 22 FHNFSERRRRDRINEKLKALQELLPNC-----TKTDKVSMLDEAIDYLKSLQ 68 59*************************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 8.5E-20 | 15 | 75 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.527 | 18 | 67 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.96E-21 | 21 | 94 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.05E-17 | 21 | 72 | No hit | No description |
Pfam | PF00010 | 4.5E-15 | 23 | 68 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.7E-18 | 24 | 73 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 187 aa Download sequence Send to blast |
MEDGSVPRRS TPPTRRSRSA EFHNFSERRR RDRINEKLKA LQELLPNCTK TDKVSMLDEA 60 IDYLKSLQLQ LQMLVMGKGM APVVPPELQQ YMHYITADPS QMPPLRPSGQ QPRPFQITQA 120 NSQRQSNVES DFLSQMQNLH PSEPPQNFLR PPKLQLYTPE QRGGLASTSH NGGWIPERSS 180 SYNFME* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 26 | 31 | ERRRRD |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Pvr.31775 | 0.0 | callus |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.7KG349000.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025826117.1 | 1e-134 | transcription factor PIF1-like | ||||
Refseq | XP_025826118.1 | 1e-134 | transcription factor PIF1-like | ||||
TrEMBL | A0A2S3IAI4 | 1e-133 | A0A2S3IAI4_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7D023 | 1e-133 | A0A2T7D023_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A3L6PTD7 | 1e-133 | A0A3L6PTD7_PANMI; Uncharacterized protein | ||||
STRING | Si011759m | 1e-132 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G20180.1 | 2e-28 | phytochrome interacting factor 3-like 5 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.7KG349000.3.p |