PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.7KG349000.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 165aa MW: 18843.3 Da PI: 10.3606 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.5 | 7.5e-11 | 22 | 104 | 4 | 39 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC..................................................TTS-ST CS HLH 4 ahnerErrRRdriNsafeeLrellPkas...............................................kapskKls 39 hn ErrRRdriN+++ L+ellP+++ +a+s++ s Pavir.7KG349000.2.p 22 FHNFSERRRRDRINEKLKALQELLPNCTkmlvmgkgmapvvppelqqymhyitadpsqmpplrpsgqqprpfqitQANSQRQS 104 59************************876777777777777777766666666666666666666666666666555555555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 6.02E-10 | 16 | 50 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 10.861 | 18 | 73 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.6E-10 | 21 | 49 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.15E-8 | 21 | 50 | No hit | No description |
Pfam | PF00010 | 1.6E-8 | 23 | 104 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.8E-4 | 24 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence Send to blast |
MEDGSVPRRS TPPTRRSRSA EFHNFSERRR RDRINEKLKA LQELLPNCTK MLVMGKGMAP 60 VVPPELQQYM HYITADPSQM PPLRPSGQQP RPFQITQANS QRQSNVESDF LSQMQNLHPS 120 EPPQNFLRPP KLQLYTPEQR GGLASTSHNG GWIPERSSSY NFME* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 26 | 31 | ERRRRD |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.31775 | 0.0 | callus |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.7KG349000.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025826117.1 | 1e-112 | transcription factor PIF1-like | ||||
Refseq | XP_025826118.1 | 1e-112 | transcription factor PIF1-like | ||||
TrEMBL | A0A2S3IAI4 | 1e-111 | A0A2S3IAI4_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7D023 | 1e-111 | A0A2T7D023_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A3L6PTD7 | 1e-111 | A0A3L6PTD7_PANMI; Uncharacterized protein | ||||
STRING | Si011759m | 1e-109 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09530.2 | 2e-12 | phytochrome interacting factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.7KG349000.2.p |