PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.7KG327000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB | ||||||||
Protein Properties | Length: 320aa MW: 34250.8 Da PI: 6.3683 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.7 | 4.1e-16 | 15 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd lv+ ++++Gg+ +W+ ++ g++R++k+c++rw +yl Pavir.7KG327000.1.p 15 KGPWTEEEDRALVEHIQRHGGHvgSWRNLPKAAGLNRCGKSCRLRWTNYL 64 79**********************************************97 PP | |||||||
2 | Myb_DNA-binding | 55.4 | 1.4e-17 | 70 | 114 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T++E+ l++ ++++lG++ W+tIa ++ gRt++++k++w+++ Pavir.7KG327000.1.p 70 RGNFTADEERLIIALHAELGNK-WSTIATHLD-GRTDNEIKNYWNTH 114 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.0E-23 | 7 | 67 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.265 | 10 | 64 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.03E-29 | 12 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.7E-12 | 14 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-14 | 15 | 64 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.04E-10 | 17 | 64 | No hit | No description |
PROSITE profile | PS51294 | 27.286 | 65 | 119 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-26 | 68 | 119 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.0E-16 | 69 | 117 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.9E-15 | 70 | 114 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.97E-12 | 72 | 115 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MGRSPCCCHD AGVKKGPWTE EEDRALVEHI QRHGGHVGSW RNLPKAAGLN RCGKSCRLRW 60 TNYLRPDIKR GNFTADEERL IIALHAELGN KWSTIATHLD GRTDNEIKNY WNTHIRKKLL 120 RMGVDPVTHQ RLPPDDVLIG GAAPGLPEAL LSAAASLGGL NTVLMQAQAL QLLLQAVSGG 180 AAAGAGLVAS FSPAADNAAM PPMLNASSIV PNSQDQQMMN LLAHANYQPA DDYLSNLASF 240 AEHDVVRQPN ASAPAPAPAP ALLVPASSSP QEVAAAADRR PVQGFSDLLS EAMEVPSMCS 300 LEDEHFWKDL LAESNHLPL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 3e-27 | 15 | 119 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h8a_C | 4e-27 | 15 | 119 | 27 | 128 | MYB TRANSFORMING PROTEIN |
1mse_C | 3e-27 | 15 | 119 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 3e-27 | 15 | 119 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Specifically and transiently expressed in root endodermal cells overlying the early stages of lateral root primordia formation. {ECO:0000269|PubMed:24902892, ECO:0000269|PubMed:25482809}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.7KG327000.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM156904 | 0.0 | AM156904.1 Zea mays mRNA for transcription factor MYB2 (myb2 gene). | |||
GenBank | BT054398 | 0.0 | BT054398.1 Zea mays full-length cDNA clone ZM_BFc0030L21 mRNA, complete cds. | |||
GenBank | HQ858691 | 0.0 | HQ858691.1 Zea mays clone UT1147 ZmMYB2 transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025825704.1 | 0.0 | transcription factor MYB41-like | ||||
Swissprot | Q9S9Z2 | 9e-67 | MYB93_ARATH; Transcription factor MYB93 | ||||
TrEMBL | A0A3L6Q4P1 | 0.0 | A0A3L6Q4P1_PANMI; Transcription factor MYB39 | ||||
STRING | Pavir.Gb00812.1.p | 1e-179 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6265 | 29 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02940.1 | 1e-70 | myb domain protein 107 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.7KG327000.1.p |
Publications ? help Back to Top | |||
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