PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.7KG323200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 332aa MW: 35134.7 Da PI: 8.3442 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42 | 1.7e-13 | 84 | 135 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r+ah ++Er+RR+++N+ ++ Lr+l+P++ + + + a+i+ A++++k+L+ Pavir.7KG323200.1.p 84 QRMAHIAVERNRRRQMNEYLAVLRSLMPES---YVHRSDQASIVSGAIDFVKELE 135 79****************************...9******************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 3.33E-14 | 82 | 139 | No hit | No description |
SuperFamily | SSF47459 | 1.44E-17 | 82 | 152 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.339 | 83 | 134 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.7E-11 | 84 | 135 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.8E-15 | 84 | 151 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.5E-11 | 89 | 140 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MTLEAMCAPC TSSDVLVYDT FNAAAAAAAS PGSFLFGNAP GVEPFPAPAA PPDAEGANRV 60 QQQGRRKRRR RQRTVKNAED AESQRMAHIA VERNRRRQMN EYLAVLRSLM PESYVHRSDQ 120 ASIVSGAIDF VKELEQQLQS LEAQKLALQQ QRGGATSERG AARAPHRDPA AATNSSANVA 180 GEAAAAERAP FARFFRYPQY ARRHAPPREE SGAGAEEASR ASASAVADVE VGVVVDAHAS 240 LRVMARRRPG QLLKMVAGMQ ALGLAVLHLN VTAAPAGLAL YTLSLKVEDG CGLTAAEDIA 300 AAAHHVLCII DAEAAQHQRL LLAPGAGQPD L* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 63 | 71 | GRRKRRRRQ |
2 | 64 | 70 | RRKRRRR |
3 | 65 | 69 | RKRRR |
4 | 65 | 72 | RKRRRRQR |
5 | 84 | 95 | RMAHIAVERNRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.7KG323200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025825670.1 | 1e-149 | transcription factor bHLH96-like isoform X1 | ||||
TrEMBL | A0A3L6QAM5 | 1e-156 | A0A3L6QAM5_PANMI; Transcription factor bHLH96-like | ||||
STRING | Pavir.J15346.1.p | 1e-138 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3712 | 36 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G46690.1 | 3e-23 | beta HLH protein 71 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.7KG323200.1.p |