PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG323100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 316aa    MW: 35399.4 Da    PI: 6.5737
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG323100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.97.2e-11140183447
                          S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          W +eE+ l++++ + +G g+Wk I++++ ++Rt+ q+  + qk+
  Pavir.7KG323100.1.p 140 WNKEEHMLFLRGLQVYGRGNWKNISKYFVTTRTPVQVSGHAQKF 183
                          *************************************9999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.02E-13134187IPR009057Homeodomain-like
PROSITE profilePS5129310.634135188IPR017884SANT domain
SMARTSM007171.2E-7136186IPR001005SANT/Myb domain
TIGRFAMsTIGR015575.0E-11138186IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.603.0E-9139177IPR009057Homeodomain-like
CDDcd001678.37E-9140184No hitNo description
PfamPF002494.4E-8140182IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MTLLMRSRQC SPGRRSMRFI RLYVDLVVMI QSGTGNNTYH FVEASGDNMN NNYEIPPGND  60
PAMNNMKVAQ DVPCGQPTPR MKRPLTEFWS MEEHRNEVAR DGVDNNFEIP VKDPAMDNMR  120
LAHDVPHSPP SPQKKLTRFW NKEEHMLFLR GLQVYGRGNW KNISKYFVTT RTPVQVSGHA  180
QKFFLKHGNT THRQRYGIND VGLSNVEPGV QNNTSGWEGY ASDGGAYNPN SYGASGQHAT  240
MNNQDQDQSP ILYHTGQANI DSSQMPAGAS NHHMGATSSS TVPIMEGTGS SQAAWASDDH  300
LEDFFFDQMM DMDMF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG323100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966689.16e-80uncharacterized protein LOC101759880
TrEMBLA0A3L6PUM31e-133A0A3L6PUM3_PANMI; Uncharacterized protein
STRINGPavir.Ga00772.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84230133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01200.11e-18MYB family protein