PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG319400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 468aa    MW: 49134.8 Da    PI: 5.5101
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG319400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.77.7e-31226284259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  Pavir.7KG319400.1.p 226 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 284
                          699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081132.925220286IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-30223286IPR003657WRKY domain
SuperFamilySSF1182903.4E-26223286IPR003657WRKY domain
SMARTSM007741.4E-37225285IPR003657WRKY domain
PfamPF031061.0E-25227284IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MCDYFLQRME GNQAGGDLTD IVRAGGGAMP EAPSTAADWQ LQGDPMLFPP PPPSSDGGAG  60
ADVVFGDPFA GLGDPFSSDY ASGADFLDAM PDAMAKVGFD TAVGGGGGGG CGGGGQLLDM  120
SRKPHLLPRG VQMPAAGVLA PRVLPSPLSP RAIRPYPALA GDMVKLGITA GQVAGCAIDA  180
AVVGMQMSSP RTAGGIKRRK NQSRKVVCIP APTAAGGRPT GEVVPSDLWA WRKYGQKPIK  240
GSPYPRGYYR CSSSKGCSAR KQVERSRTDP NMLVITYTSE HNHPWPTQRN ALAGSTRNHH  300
GKNSSGSSGS KSSQNERQQQ PNVKEEPRDP ATTTTSTITT TTSTSPAAAA VKEETLAGSS  360
EELGRAMDAA VGDHSMELMD QVFSESYKPM IPEPGQSDDF FYDLAELESD PMSLIFSKEY  420
MEAKSPTGGD RAQEKAISKD LDPFDMLDWS TTTSSAGSSF EQQGKRG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-24200287280Disease resistance protein RRS1
5w3x_D1e-24200287280Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG319400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825027.10.0probable WRKY transcription factor 35
TrEMBLA0A2T7CZC80.0A0A2T7CZC8_9POAL; Uncharacterized protein
STRINGPavir.Ga00745.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25923888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.17e-65WRKY DNA-binding protein 35