PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG316000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 448aa    MW: 49028.9 Da    PI: 8.2148
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG316000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.31.3e-165498147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         r +WT++E++l+++a +q+G   W++I +++g  +t+ q++s+ qk+
  Pavir.7KG316000.1.p 54 REKWTEDEHKLFLEALQQHGRA-WRRIQEHIG-SKTAVQIRSHAQKF 98
                         789*****************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.21E-1548101IPR009057Homeodomain-like
PROSITE profilePS5129420.13649103IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-951104IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-1552101IPR006447Myb domain, plants
SMARTSM007173.5E-1353101IPR001005SANT/Myb domain
PfamPF002494.2E-145497IPR001005SANT/Myb domain
CDDcd001673.38E-105699No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MARFQEIKAT NDRKPAADRI GHADFMDHPK KTLDSPEGPR APKARKPYTI SKQREKWTED  60
EHKLFLEALQ QHGRAWRRIQ EHIGSKTAVQ IRSHAQKFFS KVIRESSGDS NSIAAPPQIY  120
IPPARPKRKP AHPYPRNLGN SLCKDASTIK QLEKPQLKIQ LLSEQENCSP KSVLTTAQID  180
SETMATEGSG SPASSVYMEE KCLTPSTSVG ELGVQVALSK DATTSNGAAC GIPEGPVLRL  240
FGKRVVVNNL HQQPNSDTGN LKHAADMELD ASAETPTSGT GKFSSHGAEE GRTWSPWLTG  300
TQQFMYYLPQ GEVLSVHSAC QFLSYSNVSI SYGVLNPQTV ASKKQQHQPS QASDCKFTKA  360
EGSWAESITT SSSVPETTQN SDSIESSQVN NDDDEVILVP GSRKYLSTVP TYLRGFVPYK  420
KCTAQSKMPQ SHVPGEEADG DMTRLCL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.347070.0callus| leaf| root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00515DAPTransfer from AT5G17300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG316000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824173.10.0uncharacterized protein LOC112899782
TrEMBLA0A2S3I9P70.0A0A2S3I9P7_9POAL; Uncharacterized protein
STRINGPavir.Gb00859.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27223686
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.12e-32MYB_related family protein