PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.7KG312700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 568aa MW: 58189.9 Da PI: 5.1873 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.7 | 7.4e-12 | 434 | 477 | 8 | 55 |
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 E+ RR+++++ f++L llP++ +K +K++i+ +Av YIksL+ Pavir.7KG312700.1.p 434 TEKERRKKMKNMFSTLHALLPQL----PEKADKSTIVGEAVTYIKSLE 477 7*********************6....39*****************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.637 | 426 | 476 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.66E-14 | 428 | 493 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.5E-14 | 431 | 489 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.37E-12 | 431 | 481 | No hit | No description |
SMART | SM00353 | 7.2E-8 | 432 | 482 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.6E-9 | 434 | 477 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 568 aa Download sequence Send to blast |
MSQEGANLPH EAERSHDHAT APHGSTPTSD GLAIVRSSSN SSSVSKLAGE SNNAGSNPAS 60 SLVVLHAGED NTTESKIAGP AVLDAGKGNN DGSKQLASPA MLHAGEPKDN IDRSKLTSPV 120 VLHAGEDNNT REDDENAGSK MDGPTTLHVS MDSNADAGFK VDSPALLYAG ENDDDSGSKL 180 AIASQPVLHA GEDEDINAGS KLSSPVEIHA GKDNKAAESK LAIQAVPDAG EDSNARSKLS 240 TSVLPCAGEG NDNTSKLAVQ AVIHADEGNN TVSKQVIQAA IHAGEGNNAV SKLAIQSVPH 300 ADEDNNSLSK LARLEVLNAG DDDDDTAASK FAIQAPPHAG EDKLANPAAV GNEGKSDVVG 360 GEGGESAAAT GSSGDGALSK TSKKSTSDDG GGSEDAVVKD GPAAVADDGG TRGRKGKGKG 420 AAAAKKDQAL HIWTEKERRK KMKNMFSTLH ALLPQLPEKA DKSTIVGEAV TYIKSLEGTV 480 QRLEKLKQER MLAQQAAVGA GSSSGAASSH RIHVVAATVS SSPTQKMFFI QARINTAAPP 540 PPMLPENMTV EERYKLAVAE MLHAVGY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.7KG312700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT087274 | 1e-59 | BT087274.2 Zea mays full-length cDNA clone ZM_BFb0025H05 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025825310.1 | 1e-140 | uncharacterized protein LOC112900700 | ||||
TrEMBL | A0A2S3I6J3 | 1e-145 | A0A2S3I6J3_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J18412.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2005 | 36 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49770.1 | 9e-24 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.7KG312700.1.p |