PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.7KG302300.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 779aa MW: 83815.1 Da PI: 6.4153 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.8 | 1.2e-20 | 99 | 155 | 1 | 57 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +++ +++t++q+++Le++F++ ++p++++r++L+k+lgL+ rqVk+WFqNrR+++k+ Pavir.7KG302300.2.p 99 KKRYHRHTPHQIQQLEAMFKEWPHPDEKQRADLSKRLGLEPRQVKFWFQNRRTQMKN 155 678899************************************************995 PP | |||||||
2 | START | 154.3 | 1e-48 | 308 | 520 | 2 | 205 |
HHHHHHHHHHHHHHHC-TT-EEEE........EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SE CS START 2 laeeaaqelvkkalaeepgWvkss........esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetlak 78 la +a++elvk+a+ +ep+W s+ e +n +e+ ++f + + + +ea+r+sg+v ++a lve ++d Pavir.7KG302300.2.p 308 LAMRAMDELVKMAQMNEPLWIPSVsspgsstmETLNWKEYSKTFLPCVGvkpigFVSEASRESGIVNIDSAALVEFFMDEV--------- 388 6789****************9999887777776777777777776644499***********************9999999......... PP EEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCE CS START 79 aetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksngh 161 +t+e is g gal lm+aelq+lsplvp R+++f+R++ ql +g+w++vdvS+d + + +v +++lpSg+++++++ng Pavir.7KG302300.2.p 389 -STIEEISAGvagsrdGALLLMQAELQVLSPLVPrREVTFLRFCNQLAEGVWAVVDVSIDGLERDQCLVTSVNCRRLPSGCVVRETPNG- 476 .666666666666666********************************************9888877999*******************. PP EEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 162 skvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205 +kvtwveh+++ ++++h+l+++l++sgla ga +w+atlqrqce Pavir.7KG302300.2.p 477 CKVTWVEHTEYHEASVHQLYKPLLRSGLALGAGRWLATLQRQCE 520 *******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.01E-21 | 83 | 156 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.7E-23 | 86 | 150 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.977 | 96 | 156 | IPR001356 | Homeobox domain |
SMART | SM00389 | 7.8E-19 | 97 | 160 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.51E-20 | 98 | 157 | No hit | No description |
Pfam | PF00046 | 4.1E-18 | 99 | 154 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 131 | 154 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 34.209 | 298 | 524 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.89E-28 | 301 | 521 | No hit | No description |
CDD | cd08875 | 8.31E-94 | 302 | 520 | No hit | No description |
SMART | SM00234 | 3.0E-34 | 307 | 521 | IPR002913 | START domain |
Pfam | PF01852 | 9.4E-42 | 308 | 520 | IPR002913 | START domain |
SuperFamily | SSF55961 | 9.77E-19 | 542 | 749 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 779 aa Download sequence Send to blast |
MSFGDLLGGV GDAAAVPYPP YGAFASSPAL SLAVADAGRR RDGSGERAGS VPRGGGGGNA 60 KDAPEAEDDT RSSPMSGHLD VVLAGGGEDG EGGNPRKRKK RYHRHTPHQI QQLEAMFKEW 120 PHPDEKQRAD LSKRLGLEPR QVKFWFQNRR TQMKNQMERH ENTLLKQEND KLRAENLSIR 180 VAMRDAACSG CGGPALLGEM SLEEHHLRLE NARLRDELTR VCALTAKFIG KPLSPMALPP 240 VQQPHPMPGS SLDLAVTCVG SVPPSTMPVS TISELAGSVS SQMGTVITPV VTTPLAMGSG 300 DKSMFVQLAM RAMDELVKMA QMNEPLWIPS VSSPGSSTME TLNWKEYSKT FLPCVGVKPI 360 GFVSEASRES GIVNIDSAAL VEFFMDEVST IEEISAGVAG SRDGALLLMQ AELQVLSPLV 420 PRREVTFLRF CNQLAEGVWA VVDVSIDGLE RDQCLVTSVN CRRLPSGCVV RETPNGCKVT 480 WVEHTEYHEA SVHQLYKPLL RSGLALGAGR WLATLQRQCE GLAILVSSVA VPEHDSSAVP 540 LEGKRSLLKL AERMMENFCA GVSASSAEWS KLDVLTGSMR KDVRVMVRKS VDEPGVPPGV 600 VLSAATAVWM PVTPERLFNF LRNEELRAEW DILSNGGPMQ QMLRIAKGQL DGNSVTLLRA 660 DPTNTHLNSI FILQETCTDK SGAMVVYAPV DFPAMQLVMG GGDSTYVALL PSGFAILPGG 720 SSAGGVGHKT SGSLLTVAFQ ILVNSQPTAK LTLESVDTVY SLISCTIEKI KASLHCEV* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 94 | 100 | PRKRKKR |
2 | 95 | 99 | RKRKK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.25879 | 1e-104 | callus |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.7KG302300.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025823430.1 | 0.0 | homeobox-leucine zipper protein ROC4-like | ||||
Swissprot | Q7Y0V9 | 0.0 | ROC4_ORYSJ; Homeobox-leucine zipper protein ROC4 | ||||
TrEMBL | A0A2S3IA78 | 0.0 | A0A2S3IA78_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ga00993.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61150.1 | 0.0 | homeodomain GLABROUS 1 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.7KG302300.2.p |
Publications ? help Back to Top | |||
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