PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.7KG302300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 792aa MW: 85396 Da PI: 6.6102 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.8 | 1.2e-20 | 99 | 155 | 1 | 57 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +++ +++t++q+++Le++F++ ++p++++r++L+k+lgL+ rqVk+WFqNrR+++k+ Pavir.7KG302300.1.p 99 KKRYHRHTPHQIQQLEAMFKEWPHPDEKQRADLSKRLGLEPRQVKFWFQNRRTQMKN 155 678899************************************************995 PP | |||||||
2 | START | 173.8 | 1e-54 | 308 | 533 | 2 | 205 |
HHHHHHHHHHHHHHHC-TT-EEEE........EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S. CS START 2 laeeaaqelvkkalaeepgWvkss........esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla. 77 la +a++elvk+a+ +ep+W s+ e +n +e+ ++f + + + +ea+r+sg+v ++a lve ++d + +W+ ++ Pavir.7KG302300.1.p 308 LAMRAMDELVKMAQMNEPLWIPSVsspgsstmETLNWKEYSKTFLPCVGvkpigFVSEASRESGIVNIDSAALVEFFMDER-RWSDMFSc 396 6789****************9999887777776777777777776644499*****************************9.******** PP ...EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEE CS START 78 ...kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepk 157 k++t+e is g gal lm+aelq+lsplvp R+++f+R++ ql +g+w++vdvS+d + + +v +++lpSg++++++ Pavir.7KG302300.1.p 397 ivaKVSTIEEISAGvagsrdGALLLMQAELQVLSPLVPrREVTFLRFCNQLAEGVWAVVDVSIDGLERDQCLVTSVNCRRLPSGCVVRET 486 ****************************************************************9888877999**************** PP CTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 158 snghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205 +ng +kvtwveh+++ ++++h+l+++l++sgla ga +w+atlqrqce Pavir.7KG302300.1.p 487 PNG-CKVTWVEHTEYHEASVHQLYKPLLRSGLALGAGRWLATLQRQCE 533 ***.*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.01E-21 | 83 | 156 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.8E-23 | 86 | 150 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.977 | 96 | 156 | IPR001356 | Homeobox domain |
SMART | SM00389 | 7.8E-19 | 97 | 160 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.81E-20 | 98 | 157 | No hit | No description |
Pfam | PF00046 | 4.2E-18 | 99 | 154 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 131 | 154 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 44.108 | 298 | 537 | IPR002913 | START domain |
SuperFamily | SSF55961 | 5.19E-32 | 301 | 534 | No hit | No description |
CDD | cd08875 | 2.43E-105 | 302 | 533 | No hit | No description |
SMART | SM00234 | 3.7E-44 | 307 | 534 | IPR002913 | START domain |
Pfam | PF01852 | 3.8E-47 | 308 | 533 | IPR002913 | START domain |
SuperFamily | SSF55961 | 9.77E-19 | 555 | 761 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 792 aa Download sequence Send to blast |
MSFGDLLGGV GDAAAVPYPP YGAFASSPAL SLAVADAGRR RDGSGERAGS VPRGGGGGNA 60 KDAPEAEDDT RSSPMSGHLD VVLAGGGEDG EGGNPRKRKK RYHRHTPHQI QQLEAMFKEW 120 PHPDEKQRAD LSKRLGLEPR QVKFWFQNRR TQMKNQMERH ENTLLKQEND KLRAENLSIR 180 VAMRDAACSG CGGPALLGEM SLEEHHLRLE NARLRDELTR VCALTAKFIG KPLSPMALPP 240 VQQPHPMPGS SLDLAVTCVG SVPPSTMPVS TISELAGSVS SQMGTVITPV VTTPLAMGSG 300 DKSMFVQLAM RAMDELVKMA QMNEPLWIPS VSSPGSSTME TLNWKEYSKT FLPCVGVKPI 360 GFVSEASRES GIVNIDSAAL VEFFMDERRW SDMFSCIVAK VSTIEEISAG VAGSRDGALL 420 LMQAELQVLS PLVPRREVTF LRFCNQLAEG VWAVVDVSID GLERDQCLVT SVNCRRLPSG 480 CVVRETPNGC KVTWVEHTEY HEASVHQLYK PLLRSGLALG AGRWLATLQR QCEGLAILVS 540 SVAVPEHDSS AVPLEGKRSL LKLAERMMEN FCAGVSASSA EWSKLDVLTG SMRKDVRVMV 600 RKSVDEPGVP PGVVLSAATA VWMPVTPERL FNFLRNEELR AEWDILSNGG PMQQMLRIAK 660 GQLDGNSVTL LRADPTNTHL NSIFILQETC TDKSGAMVVY APVDFPAMQL VMGGGDSTYV 720 ALLPSGFAIL PGGSSAGGVG HKTSGSLLTV AFQILVNSQP TAKLTLESVD TVYSLISCTI 780 EKIKASLHCE V* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 94 | 100 | PRKRKKR |
2 | 95 | 99 | RKRKK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.25879 | 1e-104 | callus |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.7KG302300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025823430.1 | 0.0 | homeobox-leucine zipper protein ROC4-like | ||||
Swissprot | Q7Y0V9 | 0.0 | ROC4_ORYSJ; Homeobox-leucine zipper protein ROC4 | ||||
TrEMBL | A0A2S3IA78 | 0.0 | A0A2S3IA78_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ga00993.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1203 | 37 | 116 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61150.1 | 0.0 | homeodomain GLABROUS 1 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.7KG302300.1.p |
Publications ? help Back to Top | |||
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