PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG300700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRF
Protein Properties Length: 396aa    MW: 42229.2 Da    PI: 8.8716
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG300700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.52.6e-24113157145
                  WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                          d+epgrCrRtDGKkWRC +++ +++k+CErH+hrgr+rsrk++e+
  Pavir.7KG300700.1.p 113 DPEPGRCRRTDGKKWRCAKEAAPDSKYCERHMHRGRNRSRKPVEA 157
                          79****************************************996 PP
2QLQ57.34.7e-205893237
                  QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                         +FT aQ ++L++Q+l+yKyL+a++PvP++Ll++i++
  Pavir.7KG300700.1.p 58 PFTVAQYEELEHQALIYKYLVAGVPVPQDLLLPIRR 93
                         9*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009514.5E-105793IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.3775893IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.3E-135892IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.773113157IPR014977WRC domain
PfamPF088799.1E-21114156IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MAMPFASLSP AADHRPSSLL PFCRAAPLSA VGEADAQQQH HQQQHAMSAG RWAARPAPFT  60
VAQYEELEHQ ALIYKYLVAG VPVPQDLLLP IRRGFVYHQP ALGYGPYFGK KVDPEPGRCR  120
RTDGKKWRCA KEAAPDSKYC ERHMHRGRNR SRKPVEAQLV AQQQAPAATS GFQNQSPYPA  180
LLAGNGVRAG GGGGGGGGGG GGGGGGVGTC TFGLGSTAQL HMDSAAAYAT AAGGGSKYLR  240
YSAYGVRSLS DEHGQLMPAA MDTSMDNSWR LLPSQTSTFQ ATSYPLFGTL SALDESTIAS  300
LPKTQREPLS FFGSDFVTVK QESQTLRPFF DEWPKARDSW PELGDDNSLA SFSATQLSIS  360
IPMATSDFSN TSSRSPSGNT IKMSDRGMWI PTSQS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.93960.0callus| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG300700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF5158450.0EF515845.1 Zea mays putative growth-regulating factor 6 (GRF6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976689.10.0growth-regulating factor 3
SwissprotQ6AWY60.0GRF3_ORYSJ; Growth-regulating factor 3
TrEMBLA0A3L6QBD80.0A0A3L6QBD8_PANMI; Growth-regulating factor 3-like
STRINGPavir.Ga00724.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24633476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.12e-44growth-regulating factor 5