PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG296000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 597aa    MW: 61642.7 Da    PI: 8.8063
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG296000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-0588110123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C+ C+k F r  nL+ H r H
  Pavir.7KG296000.1.p  88 FVCEVCNKGFQREQNLQLHRRGH 110
                          89*******************88 PP
2zf-C2H211.60.00088165187123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC +C+k++  +s+ k H + +
  Pavir.7KG296000.1.p 165 WKCDKCSKRYAVQSDWKAHSKIC 187
                          58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.49E-787110No hitNo description
Gene3DG3DSA:3.30.160.608.3E-687110IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.004188110IPR015880Zinc finger, C2H2-like
PfamPF121713.9E-588110IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015711.09488110IPR007087Zinc finger, C2H2
PROSITE patternPS00028090110IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.1E-4153186IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.49E-7160185No hitNo description
SMARTSM00355140165185IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 597 aa     Download sequence    Send to blast
MASNSSAAFF GIRDGDQQDQ IKPLISPQQQ QQHLAAALPG AASNAPASGQ GAPAAAAQPP  60
PKKKRTLPDP DAEVIALSPK TLLATNRFVC EVCNKGFQRE QNLQLHRRGH NLPWKLKQKN  120
PLQAQRRRVY LCPEPTCVHH DPSRALGDLT GIKKHFCRKH GEKKWKCDKC SKRYAVQSDW  180
KAHSKICGTR EYRCDCGTLF SRRDSFITHR AFCDALAQES ARLPPTSLSS LTGHLYGATN  240
AGNMALSLSQ VGSHLNSTLQ DGHHHHPSPE LLRLGAAAGG GGGSIAARLD HLLSPTSGAS  300
AFRPAPQGSA AAFFLNAAGQ DFGDDAGNGP HSFMQAGKPF HGLMQLPDLQ GNGAGGPGGS  360
APGLFNLGFF ANNGNSSGSS HEHASQGLMN NDQFSGGAGG GVGGGGSEAS AAGIFGGNFV  420
GGGDHVPTPG LYGGDQATML PQMSATALLQ KAAQMGATSS PNGAASMFRG FVGSSPHGHG  480
RPATPHHMEQ SEANLNDLMN SLAGGGVSAA GMFGGSNGGG AGMFDPRQLC DMEHKVKFGQ  540
GGGGGDMTRD FLGVGGGGIV RGISTPRGDH HQSSSDMSSL EAEMKSASSF NGGRMP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-34161230370Zinc finger protein JACKDAW
5b3h_F1e-34161230370Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1394406SGGAGGGVGGGGS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.45240.0callus| leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG296000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824078.10.0protein indeterminate-domain 5, chloroplastic-like
RefseqXP_025824079.10.0protein indeterminate-domain 5, chloroplastic-like
RefseqXP_025824080.10.0protein indeterminate-domain 5, chloroplastic-like
RefseqXP_025824082.10.0protein indeterminate-domain 5, chloroplastic-like
RefseqXP_025824083.10.0protein indeterminate-domain 5, chloroplastic-like
TrEMBLA0A3L6PX340.0A0A3L6PX34_PANMI; Uncharacterized protein
STRINGPavir.Ga01013.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17333798
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.11e-105indeterminate(ID)-domain 12