PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG292200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 200aa    MW: 20911 Da    PI: 7.5129
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG292200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.27.2e-171765255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          y+G+r  +++g+Wv+eIr+p++   ++r++lg+f tae+Aa a++ a+++l+g
  Pavir.7KG292200.1.p 17 FYRGIR--SRSGKWVSEIREPRK---TRRIWLGTFPTAEMAAVAYDVAARALRG 65
                         69***6..678*********843...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.63E-181774IPR016177DNA-binding domain
SMARTSM003807.8E-291779IPR001471AP2/ERF domain
PROSITE profilePS5103220.2441773IPR001471AP2/ERF domain
PfamPF008473.9E-91865IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-271874IPR001471AP2/ERF domain
CDDcd000187.82E-251875No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MSDYGGPASP RTGKHPFYRG IRSRSGKWVS EIREPRKTRR IWLGTFPTAE MAAVAYDVAA  60
RALRGPDTAL NFPDLAASRP APASTSADDI RAAAAEAAAA LQEPDRRPAR GIAPAAARGG  120
AQQQTAGGSS GAAAQQEGGG SGAGTQYYLD DEALFETPQY LRNMAAGMML SPPRLGRNSS  180
DDSPDPSEAG DSLWSYRDP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-121373363ATERF1
3gcc_A1e-121373363ATERF1
5wx9_A2e-1214731172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG292200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9557511e-134EU955751.1 Zea mays clone 1544743 ap2/EREBP transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825905.11e-118ethylene-responsive transcription factor ERF025-like
TrEMBLA0A2T8IDH91e-117A0A2T8IDH9_9POAL; Uncharacterized protein
STRINGPavir.Gb00885.1.p1e-121(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36542762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.17e-31ERF family protein