PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG285500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 485aa    MW: 52429.9 Da    PI: 8.8965
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG285500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM70.16e-22201772127
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k...............kvkaeekewyfFskrdkkyatgkrkn 75 
                          p+GfrF+Pt  elv +yL++k+ +k++  ++++ e+d y+++P+ L  +               + ++ +++wyf s+r+++y+ g+r++
  Pavir.7KG285500.1.p  20 PVGFRFKPTLRELVEFYLHPKLLDKPTVPNDAVIEADAYECHPEILTiMqhlrtlrhfaygimyQKRGADDNWYFLSPRSRRYPGGDRPT 109
                          89************************88879999************8537899999999987653344677*****************99 PP

                  NAM  76 ratk..sgyWkatgkdkevlsk..kgel............vglkktLvfykg..rapkgektdWvmheyr 127
                          r t+  +g+ k   k+ +  ++  +  +              + +tL++y g  r+++ +kt+W+mhe +
  Pavir.7KG285500.1.p 110 RRTAdnRGRLKPGRKKGAADHSkaS--KgrprknlsvgaiEFTENTLAYYVGepRNENETKTKWLMHELT 177
                          9655346666654444444443330..23445556666658899******5544888999********76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.85E-2418209IPR003441NAC domain
PROSITE profilePS5100528.70719209IPR003441NAC domain
PfamPF023656.1E-1420177IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MAGVAERPSG GGDDEEGNYP VGFRFKPTLR ELVEFYLHPK LLDKPTVPND AVIEADAYEC  60
HPEILTIMQH LRTLRHFAYG IMYQKRGADD NWYFLSPRSR RYPGGDRPTR RTADNRGRLK  120
PGRKKGAADH SKASKGRPRK NLSVGAIEFT ENTLAYYVGE PRNENETKTK WLMHELTVPE  180
LDKEKGPENA AGEKPRELNK YVMCRIYKSP LKKWRELEDD KGSTSSASAP APAPACDEPA  240
PTSSRSGPQP ETVAETRATS SKSAGKRPAV EQPSGLAANA LNKRASSGYY HGVPGLPPLM  300
QWPPPPMYNS MQGPVQLQRP PLTYGPHGQA PPVLRLCPPH RTASAVPNSL GRTAARLSFA  360
GQQHVRPTAS TQPACFDEGA NLNHPAGAEA MVPRTQFPAP HNFYPCSGVQ QQQQQSSSPA  420
IPAAIVPPGA AGPVDVEATP AADDAPGKLS VPGDANQGSA KGDCYGYSNQ LFEDLLADLA  480
PLKN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG285500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823986.11e-157NAC domain-containing protein 22-like
TrEMBLA0A3L6Q9A20.0A0A3L6Q9A2_PANMI; Uncharacterized protein
STRINGSi010053m1e-144(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1936857
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.16e-18NAC domain containing protein 32