PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.7KG278000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 303aa MW: 31474.6 Da PI: 5.588 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.5 | 3.8e-19 | 118 | 168 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr+++ +g+Wv+eIr+p++ + r++lg+f tae+Aa+a++ a+++++g Pavir.7KG278000.1.p 118 PSYRGVRRRS-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVAALAIKG 168 57*****887.**********843...6***********************9987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.74E-31 | 118 | 177 | No hit | No description |
Pfam | PF00847 | 1.8E-13 | 118 | 168 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-32 | 119 | 177 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-22 | 119 | 177 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.118 | 119 | 176 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.0E-37 | 119 | 182 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.2E-11 | 120 | 131 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.2E-11 | 142 | 158 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 303 aa Download sequence Send to blast |
MEATAQRGME MEAIATHAHA ATTSSSSSSS STSSSSCLIN GVPKEVPKSS KTANKRKRAS 60 SPDSQELEAN GSTGHQGEES SSCCSTDDNV VASGCNKSQA AAAAGGARSG SRSGYKHPSY 120 RGVRRRSWGK WVSEIREPRK KSRIWLGTFP TAEMAARAHD VAALAIKGRA AHLNFPDRAH 180 ELPRPASTSP ADIQAAAALA AAAAEVQCDA LPSPSSSSAE LPSSPAADES PEAACCPETT 240 TTTTHGGDGG QCQDNALFDL PDLLLDLRDG LWWPPVWSAA MAAEEYDGGD VVGMHEPLLW 300 AE* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-18 | 110 | 176 | 5 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Pvr.25311 | 0.0 | root |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.7KG278000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU956338 | 1e-172 | EU956338.1 Zea mays clone 1560970 dehydration-responsive element-binding protein 1B mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025824727.1 | 1e-130 | ethylene-responsive transcription factor ERF024-like | ||||
Swissprot | Q8LBQ7 | 1e-47 | ERF34_ARATH; Ethylene-responsive transcription factor ERF034 | ||||
TrEMBL | A0A1E5VNF5 | 1e-132 | A0A1E5VNF5_9POAL; Ethylene-responsive transcription factor ERF038 | ||||
STRING | Pavir.Ga01095.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP159 | 35 | 354 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G44940.1 | 2e-42 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.7KG278000.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|