PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG277700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 346aa    MW: 36838.7 Da    PI: 7.6599
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG277700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.31.2e-103176146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                         +g+W +eEd  l++ v+ +G+ +W++I ++  + Rt+k+c++rw +
  Pavir.7KG277700.1.p 31 KGPWMAEEDAVLLEHVRAHGPCDWSSIRSKGLLPRTGKSCRLRWVN 76
                         79*************************8876677**********87 PP
2Myb_DNA-binding42.51.5e-1387127345
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          ++++eE+   +++ +q+G++ W++Ia +++ gRt++++k++w 
  Pavir.7KG277700.1.p  87 KFSAEEERVVLELQAQFGNK-WARIATYLP-GRTDNDVKNFWS 127
                          79******************.*********.***********5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.3162678IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.0E-182879IPR009057Homeodomain-like
SuperFamilySSF466895.86E-2629126IPR009057Homeodomain-like
SMARTSM007173.9E-93080IPR001005SANT/Myb domain
CDDcd001675.03E-103378No hitNo description
PfamPF139218.9E-103484No hitNo description
PROSITE profilePS5129420.25279134IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.1E-1880132IPR009057Homeodomain-like
SMARTSM007175.2E-1284132IPR001005SANT/Myb domain
PfamPF002498.5E-1287127IPR001005SANT/Myb domain
CDDcd001671.49E-1087126No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MARAPGGGRR RGGGGGSRRR DAAGGGDAVR KGPWMAEEDA VLLEHVRAHG PCDWSSIRSK  60
GLLPRTGKSC RLRWVNKLRP NLKTGCKFSA EEERVVLELQ AQFGNKWARI ATYLPGRTDN  120
DVKNFWSTRQ KRLARLLCAP LPARCTSRNT SAAAAKAPAA ASSSLESRPA TVGPSLDRVT  180
FGSSSDVHPC SAATPFMDAR NAALVPYDQL ASGVLSFNGA LPPLAPGTDS HECSSSNAAP  240
LLQKSPFDEP PYPLLDYPGM PECWNMAPGG FVNAGAMDDL AYQELLPMIS PPMMFPFFGT  300
ECAQGGVKPE PPDAPDFFDD LPPDMFDSLD QVPPPLSPPA TSSGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-263113227126MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1614GGRRRGGGG
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG277700.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6630009e-53AL663000.4 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0034G17, complete sequence.
GenBankAL7316139e-53AL731613.5 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0065H10, complete sequence.
GenBankAP0149609e-53AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126129e-53CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankCR8552189e-53CR855218.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0106P14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824013.10.0probable transcription factor MYB58
SwissprotQ0JB891e-112MYB58_ORYSJ; Probable transcription factor MYB58
TrEMBLA0A3L6PWJ90.0A0A3L6PWJ9_PANMI; Myb-related protein MYBAS2
STRINGPavir.J35399.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57003357
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.11e-57MYB family protein
Publications ? help Back to Top
  1. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]