PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.7KG277200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 226aa MW: 25103.6 Da PI: 8.9359 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.5 | 1.3e-19 | 75 | 129 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q +Le+ F+++++++ ++++ LA++lgL rqV vWFqNrRa+ k Pavir.7KG277200.1.p 75 RKKLRLSKDQSAVLEDSFREHPTLNPRQKAALAQQLGLRPRQVEVWFQNRRARTK 129 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 129.8 | 1.1e-41 | 75 | 164 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rlsk+q+++LE+sF+e+ +L+p++K++la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr + Pavir.7KG277200.1.p 75 RKKLRLSKDQSAVLEDSFREHPTLNPRQKAALAQQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLHKEVQELR-A 163 69*************************************************************************************9.5 PP HD-ZIP_I/II 91 l 91 l Pavir.7KG277200.1.p 164 L 164 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 7.1E-19 | 66 | 132 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.313 | 71 | 131 | IPR001356 | Homeobox domain |
SMART | SM00389 | 7.4E-18 | 73 | 135 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 6.1E-17 | 75 | 129 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 6.8E-19 | 75 | 129 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.21E-15 | 75 | 132 | No hit | No description |
PRINTS | PR00031 | 3.8E-6 | 102 | 111 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 106 | 129 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 3.8E-6 | 111 | 127 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.6E-11 | 131 | 165 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 3.8E-25 | 131 | 174 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MTERAEDLGL SLSLSSSLAS PRTHHVAAML LRSPEKRFLE TMPLLPAKRS ELTPEEGLRG 60 ASDEEDGGCG IDGSRKKLRL SKDQSAVLED SFREHPTLNP RQKAALAQQL GLRPRQVEVW 120 FQNRRARTKL KQTEVDCEFL KRCCETLTEE NRRLHKEVQE LRALKLVSPH LYMHMSPPTT 180 LTMCPSCERV SSTANSAAAA APSDRRASEG AAVCHRPIAV RPQQS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 73 | 79 | SRKKLRL |
2 | 123 | 131 | RRARTKLKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.2404 | 9e-71 | stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.7KG277200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU974980 | 0.0 | EU974980.1 Zea mays clone 462177 homeobox-leucine zipper protein ATHB-4 mRNA, complete cds. | |||
GenBank | KJ728362 | 0.0 | KJ728362.1 Zea mays clone pUT6644 HB transcription factor (HB53) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004976428.1 | 1e-132 | homeobox-leucine zipper protein HOX17 | ||||
Swissprot | Q01I23 | 1e-107 | HOX17_ORYSI; Homeobox-leucine zipper protein HOX17 | ||||
TrEMBL | K3Y9R6 | 1e-130 | K3Y9R6_SETIT; Uncharacterized protein | ||||
STRING | Si010958m | 1e-131 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2587 | 38 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16780.1 | 2e-73 | homeobox protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.7KG277200.1.p |