PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG272800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GATA
Protein Properties Length: 437aa    MW: 47646.2 Da    PI: 7.4034
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG272800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.21.7e-16741135
                 GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                         C++Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  Pavir.7KG272800.1.p  7 CRHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGS 41
                         ****************55555***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.5E-10153IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.76E-11545No hitNo description
CDDcd002026.32E-15640No hitNo description
PROSITE profilePS5011411.345740IPR000679Zinc finger, GATA-type
PfamPF003202.5E-14741IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.2E-12741IPR013088Zinc finger, NHR/GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MGKQGPCRHC GVTSTPLWRN GPPDKPVLCN ACGSRWRTKG SLANYTPMHR KDDIDDDEPR  60
INKLKPPTSK LKSQKKKANH IIIENGPFSC QNFRKMGDAD PSYRSSSGSA VSYSENCRPY  120
GASDASEMTG SAQSHAWESL VSSRKRSWVT RQKPSPLYYL SGSLEEDLLY HSETPVGSLE  180
IGSGSVLLRH PNLKSLEEES ETSSIPADNK SYITSESYSG SASFVAHSGN RAAINLNAAT  240
ARPKRSPLHI EDNARRDKLH YGNQHIPESI GSPLVSVGLE EKEIKATGGV ENISRSKGST  300
KFTMNLLKRS HDTHIQSDTE LEGTMMNHKR VLKSGDLVPE FKSSSLLKSS YATKDSTCPG  360
EALNLFMLPP EKLSLLVPQQ FADDDSDQDL LLEIPLNAWH AEAELLCQPS HQLSSITQSS  420
NSVDGVAGGE GSLKQP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.178661e-151callus| leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG272800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0424871e-163BT042487.1 Zea mays full-length cDNA clone ZM_BFb0296I21 mRNA, complete cds.
GenBankEU9621171e-163EU962117.1 Zea mays clone 240325 GATA transcription factor 29 mRNA, complete cds.
GenBankKJ7268461e-163KJ726846.1 Zea mays clone pUT3386 C2C2-GATA transcription factor (GATA5) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825377.10.0uncharacterized protein LOC112900793
TrEMBLA0A2S3I8X40.0A0A2S3I8X4_9POAL; Uncharacterized protein
STRINGPavir.Ga00650.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44243464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.34e-50GATA transcription factor 26