PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG269700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HD-ZIP
Protein Properties Length: 264aa    MW: 29228.6 Da    PI: 5.8096
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG269700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.81.1e-1959112456
                          -SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          +++ft+eq++ Le++F+  + ++  +e++eLA++lgL+ rqV +WFqN+Ra+++
  Pavir.7KG269700.1.p  59 KRRFTEEQIRSLESMFHAhHAKLEPREKAELARELGLQPRQVAIWFQNKRARWR 112
                          458**************9899********************************9 PP
2HD-ZIP_I/II124.25.9e-4057150193
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                          e+krr+++eq+++LE++F++++ kLep++K+elareLglqprqva+WFqn+RAR+++kqlE+dy+aL++++dal+++ e+L++e+ +L++
  Pavir.7KG269700.1.p  57 ERKRRFTEEQIRSLESMFHAHHaKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQLEHDYAALRDKFDALHARVESLKQEKLALTA 146
                          69******************999******************************************************************* PP

          HD-ZIP_I/II  90 elke 93 
                          +l+e
  Pavir.7KG269700.1.p 147 QLQE 150
                          *987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.63E-1848116IPR009057Homeodomain-like
PROSITE profilePS5007117.76753114IPR001356Homeobox domain
SMARTSM003898.6E-2056118IPR001356Homeobox domain
CDDcd000861.94E-1658115No hitNo description
PfamPF000464.0E-1759112IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.2E-2059121IPR009057Homeodomain-like
PRINTSPR000316.6E-78594IPR000047Helix-turn-helix motif
PROSITE patternPS00027089112IPR017970Homeobox, conserved site
PRINTSPR000316.6E-794110IPR000047Helix-turn-helix motif
PfamPF021837.6E-14114155IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MDRPDRHQLF MPLPVQQQQL CAPMMMDEQA SFLAGRAAAG GGGGGRGGGG AAGRGGERKR  60
RFTEEQIRSL ESMFHAHHAK LEPREKAELA RELGLQPRQV AIWFQNKRAR WRSKQLEHDY  120
AALRDKFDAL HARVESLKQE KLALTAQLQE LSERLRVRED HRAASGSVDV AATASSSSCN  180
GGGGEAEDDK RNVVLRCVDM EPPESCVLGG ACATPADVSV EESECDDHHH RYRLDYDDGF  240
PESFCATPEL WEPWPLLEWN AVA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14349GGRGGGG
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG269700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7282501e-167KJ728250.1 Zea mays clone pUT6527 HB transcription factor (HB66) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826405.11e-137homeobox-leucine zipper protein HOX22-like
SwissprotQ01IK02e-95HOX22_ORYSI; Homeobox-leucine zipper protein HOX22
SwissprotQ7XUJ52e-95HOX22_ORYSJ; Homeobox-leucine zipper protein HOX22
TrEMBLA0A2S3I9151e-135A0A2S3I915_9POAL; Uncharacterized protein
STRINGPavir.Ga00670.1.p1e-158(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40273175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.13e-35homeobox 7