PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG269200.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Trihelix
Protein Properties Length: 529aa    MW: 57217.7 Da    PI: 5.7454
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG269200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix109.42.2e-34271356187
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                          rW+k ev+aLi++r +++ r++++  k+plWee+s+ mr+ g++rs+k+Ckekwen+nk+ykk+ke++kkr +e+s+tcpyf+qlea
  Pavir.7KG269200.2.p 271 RWPKTEVHALIQLRMDLDMRYQETGPKGPLWEEISSGMRRLGYNRSSKRCKEKWENINKYYKKVKESNKKR-PEDSKTCPYFHQLEA 356
                          8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007178.2E-4268330IPR001005SANT/Myb domain
PROSITE profilePS500907.352270328IPR017877Myb-like domain
CDDcd122035.51E-31270335No hitNo description
PfamPF138377.4E-24270357No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MSSMPPPPPG PMMQPAPISS VAPAPAPAPA PVEMPSAPHQ PLNLPGFSFS SMSESESDDE  60
SEDDDMTAET GGSQDRLGKR KRGGGGKKMM FFFEGLMQQV VERQEEMQRR FLETMEKREA  120
ERTAREEAWR RQEVARLNRE QEQLAQERAA AASRDAAIIA FIQRIGGQSV QPPPAIVVPM  180
SVQTPPPPKQ PPRQQHPPPP PSPQATTPQS NKPISAAPLQ QQPKETSHRD AGTPRSAPPT  240
SGASLELVPV AEQHVDYGPG GGDGGAASSS RWPKTEVHAL IQLRMDLDMR YQETGPKGPL  300
WEEISSGMRR LGYNRSSKRC KEKWENINKY YKKVKESNKK RPEDSKTCPY FHQLEAIYSR  360
KHLRSIAAAA ASNVTVAAAA PPVLPEQPNP SRHEIEGKNI NDDKRNNGGS GGGAPQVPAS  420
NGDKAPTTPA AFDADSGMKK PEDIVRGLNE HPPREFTTDE TDSDDMGDEY TDDGEEGEDD  480
GKMQYRIQFQ RPTNPGGTNS APAPATTAAA APAVPTSAPA STFLAMVQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG269200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0550330.0BT055033.1 Zea mays full-length cDNA clone ZM_BFc0059A16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825673.10.0trihelix transcription factor GTL1-like isoform X1
RefseqXP_025825674.10.0trihelix transcription factor GTL1-like isoform X1
TrEMBLA0A3L6PWB50.0A0A3L6PWB5_PANMI; Uncharacterized protein
STRINGPavir.Ga00673.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.15e-40Trihelix family protein