PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG268200.3.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GATA
Protein Properties Length: 435aa    MW: 45633.1 Da    PI: 8.1091
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG268200.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA602.9e-19354388135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          Cs+Cg+ kTp+WR gp+g ktLCnaCG++y++ +l
  Pavir.7KG268200.3.p 354 CSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRL 388
                          *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.85E-14345409No hitNo description
SMARTSM004011.8E-18348402IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.018348384IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.0E-15352386IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.01E-15353410No hitNo description
PROSITE patternPS003440354379IPR000679Zinc finger, GATA-type
PfamPF003203.1E-17354388IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MLHQTLLPSS FPPSSSASSS SPFLHASDAA TAPPVGSSPS RSAFPRGSAM PSLAHRHGPL  60
DDGRMDALKS HNSFPPEETA EDAAAAAAGA LAEKDGFSVE DLLDLEEFGE PDKDGPDNEE  120
APPPPAAAAA EVKSNEDSQP LSVVTYDLPP PPPEMVDLPA HDVEELEWVS RIMDDSLSEL  180
PPQPQPSAAL VASMALRPPL TQQRRAPQAH DGAYRALPAA HGPLRTPTIC ALSTEALVPV  240
KAKRSKRTRG PGWSLSGASF LSDSASSSST TTTSSCSSSG SFSSFLLDSP PFGGLELGEG  300
YFNHFLPAPP SKKSKHGGGK GSKHKPKKRG RRPKHLPPNP SAAAQQPAPG DRRCSHCGVQ  360
KTPQWRAGPE GAKTLCNACG VRYKSGRLLP EYRPACSPTF VSSIHSNSHR KVLEMRRKKE  420
GGMVATAAPA VASF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.66340.0callus| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG268200.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9693520.0EU969352.1 Zea mays clone 329022 GATA zinc finger family protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976389.10.0GATA transcription factor 6
TrEMBLK3Y7D50.0K3Y7D5_SETIT; Uncharacterized protein
STRINGPavir.Ga00679.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.22e-39GATA transcription factor 5