PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.7KG255700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | TCP | ||||||||
Protein Properties | Length: 202aa MW: 20793.6 Da PI: 10.5997 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 109.7 | 4.2e-34 | 47 | 142 | 9 | 89 |
TCP 9 skihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.seceaesssssasnsssg......... 88 +++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tg+++++a +c ss s+s+++ + Pavir.7KG255700.1.p 47 KDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSILAATGSGTTPAvFSC---SSAPSTSSPTVAaaahpvlgk 133 89*******************************************************999994444...222222222222222223333 PP TCP 89 ........k 89 + Pavir.7KG255700.1.p 134 rpredhepA 142 333333331 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.9E-30 | 46 | 139 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.009 | 46 | 100 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MASRDAATFQ VYRPMPAPTP APAPMSLAAA ADAAAPAPKK ASPGAGKDRH SKVNGRGRRV 60 RMPIVCAARV FQLTRELGLK SDGQTIEWLL RQAEPSILAA TGSGTTPAVF SCSSAPSTSS 120 PTVAAAAHPV LGKRPREDHE PAPAPAPFWA TLQARPVAWG LSPAQEAAAQ AYASVAAQQG 180 HHLNLLSVLS GAARPSEEES R* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.7KG255700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727696 | 1e-144 | KJ727696.1 Zea mays clone pUT5635 TCP transcription factor (TCP14) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004976294.1 | 5e-92 | transcription factor PCF1 | ||||
Swissprot | Q9FMX2 | 3e-38 | TCP7_ARATH; Transcription factor TCP7 | ||||
TrEMBL | A0A0A9DEW8 | 3e-97 | A0A0A9DEW8_ARUDO; Uncharacterized protein | ||||
STRING | Pavir.Ga00835.1.p | 1e-139 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1941 | 33 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23280.1 | 1e-35 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.7KG255700.1.p |