PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.7KG252300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | B3 | ||||||||
Protein Properties | Length: 132aa MW: 14250.5 Da PI: 8.9227 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 36.9 | 6.5e-12 | 14 | 92 | 2 | 86 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 vl++ +v k ++l +p + ++ g+ + + ++sW v+++ + + l+ GW++Fv an+L+ gD +vF+l+ Pavir.7KG252300.1.p 14 TIVLSKGHVDKPAQLEIPSRLHSHLPGSR-VP---AVLLFGNQSWAVTYC--GELKCKKLGPGWRDFVVANRLRIGDACVFELIT 92 56677778888888888888774443331.22...23334569******5..5554456***********************875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.8E-16 | 7 | 114 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.06E-15 | 8 | 92 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.27E-14 | 11 | 114 | No hit | No description |
SMART | SM01019 | 7.4E-5 | 13 | 116 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.152 | 13 | 116 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.5E-9 | 13 | 92 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 132 aa Download sequence Send to blast |
MQIVPLSGDK PFFTIVLSKG HVDKPAQLEI PSRLHSHLPG SRVPAVLLFG NQSWAVTYCG 60 ELKCKKLGPG WRDFVVANRL RIGDACVFEL ITPAAGGTGS EGDGKVVFRV QVLRGDLPEE 120 ITSRGATSRD PI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.7KG252300.1.p |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025811196.1 | 1e-59 | B3 domain-containing protein Os06g0112300-like isoform X1 | ||||
Refseq | XP_025811197.1 | 9e-60 | B3 domain-containing protein Os06g0112300-like isoform X2 | ||||
Refseq | XP_025811198.1 | 9e-60 | B3 domain-containing protein Os06g0112300-like isoform X2 | ||||
Swissprot | Q9LHY9 | 2e-33 | Y6112_ORYSJ; B3 domain-containing protein Os06g0112300 | ||||
TrEMBL | A0A3L6PEL1 | 3e-59 | A0A3L6PEL1_PANMI; B3 domain-containing protein | ||||
STRING | Pavir.Fb00518.1.p | 3e-90 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12046 | 19 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49480.1 | 9e-07 | related to vernalization1 1 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.7KG252300.1.p |
Publications ? help Back to Top | |||
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