PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.7KG249300.2.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NAC

Protein Properties

Length: 265aa MW: 28839.4 Da PI: 8.4509

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.7KG249300.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	102	7.8e-32	31	120	44	128
NAM 44 PwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.....kgelvglkktLvfykgrapkgektdWvmheyrl 128 P+ +++k + +ewyfFs rd+kyatg+r+nratk+gyWkatgkd+ev + ++++vg++ktLvfy+grap+g+k+ Wvmhe+rl Pavir.7KG249300.2.p 31 PKLHSNAAKLTASEWYFFSFRDRKYATGSRTNRATKTGYWKATGKDREVRHPgpaaaSRAVVGMRKTLVFYQGRAPNGVKSCWVMHEFRL 120 5433345556778************************************9888877788*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	36.971	1	139	IPR003441	NAC domain
SuperFamily	SSF101941	1.57E-37	30	139	IPR003441	NAC domain
Pfam	PF02365	1.1E-15	30	120	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MSNGHDSLFF QFLQSFTFRP AAGSRSLIMH PKLHSNAAKL TASEWYFFSF RDRKYATGSR 60 TNRATKTGYW KATGKDREVR HPGPAAASRA VVGMRKTLVF YQGRAPNGVK SCWVMHEFRL 120 DSPQTPPKED WVLCRVFQKR KDGEQDSAGS SSQAAAAMPD DHRPVMDAYV DQTAAGSSAG 180 FAPPPQEDAV IGGFDPVLMN AAAMWQYGSV LDYHFPPQEV TSSPMMAGLG SRGVGDGCGG 240 FYYDTGFEDM ANIGGMGFAQ GWMG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-29	11	145	29	171	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-29	11	145	29	171	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-29	11	145	29	171	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-29	11	145	29	171	NO APICAL MERISTEM PROTEIN
3swm_A	5e-29	11	145	32	174	NAC domain-containing protein 19
3swm_B	5e-29	11	145	32	174	NAC domain-containing protein 19
3swm_C	5e-29	11	145	32	174	NAC domain-containing protein 19
3swm_D	5e-29	11	145	32	174	NAC domain-containing protein 19
3swp_A	5e-29	11	145	32	174	NAC domain-containing protein 19
3swp_B	5e-29	11	145	32	174	NAC domain-containing protein 19
3swp_C	5e-29	11	145	32	174	NAC domain-containing protein 19
3swp_D	5e-29	11	145	32	174	NAC domain-containing protein 19
4dul_A	4e-29	11	145	29	171	NAC domain-containing protein 19
4dul_B	4e-29	11	145	29	171	NAC domain-containing protein 19
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.8545	0.0	callus\| stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.7KG249300.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM017006	1e-129	KM017006.1 Miscanthus lutarioriparius NAC8 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025824637.1	1e-138	protein CUP-SHAPED COTYLEDON 1-like
TrEMBL	A0A2T7CXR4	1e-138	A0A2T7CXR4_9POAL; Uncharacterized protein
STRING	Pavir.Ga01251.1.p	1e-168	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28530.1	7e-51	NAC domain containing protein 74

Link Out ? help Back to Top
Phytozome	Pavir.7KG249300.2.p